Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FWK55_RS03380 | Genome accession | NZ_CP042990 |
| Coordinates | 742084..742548 (-) | Length | 154 a.a. |
| NCBI ID | WP_011609284.1 | Uniprot ID | A0A9Q6Z0H2 |
| Organism | Histophilus somni strain UOC-KLM-ATR-011 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 737084..747548
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FWK55_RS03350 (FWK55_03350) | focA | 737490..738341 (-) | 852 | WP_136122234.1 | formate transporter FocA | - |
| FWK55_RS03355 (FWK55_03355) | hinT | 738586..738936 (+) | 351 | WP_075293713.1 | purine nucleoside phosphoramidase | - |
| FWK55_RS03360 (FWK55_03360) | - | 738936..739292 (+) | 357 | WP_075293714.1 | YcfL family protein | - |
| FWK55_RS03365 (FWK55_03365) | nagZ | 739299..740354 (+) | 1056 | WP_075293715.1 | beta-N-acetylhexosaminidase | - |
| FWK55_RS03370 (FWK55_03370) | - | 740374..740892 (+) | 519 | WP_075293952.1 | ClbS/DfsB family four-helix bundle protein | - |
| FWK55_RS03375 (FWK55_03375) | metF | 741108..741997 (+) | 890 | Protein_643 | methylenetetrahydrofolate reductase | - |
| FWK55_RS03380 (FWK55_03380) | ssb | 742084..742548 (-) | 465 | WP_011609284.1 | single-stranded DNA-binding protein | Machinery gene |
| FWK55_RS03385 (FWK55_03385) | uvrA | 742727..745558 (+) | 2832 | WP_075293717.1 | excinuclease ABC subunit UvrA | Machinery gene |
| FWK55_RS03390 (FWK55_03390) | - | 745730..746785 (+) | 1056 | WP_011609282.1 | rod shape-determining protein | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 17419.34 Da Isoelectric Point: 5.7904
>NTDB_id=333735 FWK55_RS03380 WP_011609284.1 742084..742548(-) (ssb) [Histophilus somni strain UOC-KLM-ATR-011]
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF
Nucleotide
Download Length: 465 bp
>NTDB_id=333735 FWK55_RS03380 WP_011609284.1 742084..742548(-) (ssb) [Histophilus somni strain UOC-KLM-ATR-011]
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGCAAAGGCTCAAAAGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAATGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCAGATCGTGGACAAATGGGAGGATACGAACCTCAACAGCAACCAACCTACCAATCACATTCTCAAC
CTAAACCGAGCATTGCATCTCCATCACCTGTTGATGCTCCACTTGATGATGACATTCCATTTTAA
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGCAAAGGCTCAAAAGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAATGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCAGATCGTGGACAAATGGGAGGATACGAACCTCAACAGCAACCAACCTACCAATCACATTCTCAAC
CTAAACCGAGCATTGCATCTCCATCACCTGTTGATGCTCCACTTGATGATGACATTCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.536 |
100 |
0.747 |
| ssb | Vibrio cholerae strain A1552 |
52.247 |
100 |
0.604 |
| ssb | Neisseria gonorrhoeae MS11 |
44.828 |
100 |
0.506 |
| ssb | Neisseria meningitidis MC58 |
44.509 |
100 |
0.5 |