Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FWK50_RS03375 Genome accession   NZ_CP042989
Coordinates   742067..742531 (-) Length   154 a.a.
NCBI ID   WP_135026450.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-010     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 737067..747531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK50_RS03345 (FWK50_03345) focA 737477..738328 (-) 852 WP_075293712.1 formate transporter FocA -
  FWK50_RS03350 (FWK50_03350) hinT 738573..738923 (+) 351 WP_075293713.1 purine nucleoside phosphoramidase -
  FWK50_RS03355 (FWK50_03355) - 738923..739279 (+) 357 WP_075293714.1 YcfL family protein -
  FWK50_RS03360 (FWK50_03360) nagZ 739286..740341 (+) 1056 WP_075293715.1 beta-N-acetylhexosaminidase -
  FWK50_RS03365 (FWK50_03365) - 740361..740879 (+) 519 WP_075293952.1 ClbS/DfsB family four-helix bundle protein -
  FWK50_RS03370 (FWK50_03370) metF 741095..741980 (+) 886 Protein_643 methylenetetrahydrofolate reductase -
  FWK50_RS03375 (FWK50_03375) ssb 742067..742531 (-) 465 WP_135026450.1 single-stranded DNA-binding protein Machinery gene
  FWK50_RS03380 (FWK50_03380) uvrA 742710..745541 (+) 2832 WP_075293717.1 excinuclease ABC subunit UvrA Machinery gene
  FWK50_RS03385 (FWK50_03385) - 745713..746768 (+) 1056 WP_011609282.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17409.30 Da        Isoelectric Point: 5.7904

>NTDB_id=333679 FWK50_RS03375 WP_135026450.1 742067..742531(-) (ssb) [Histophilus somni strain UOC-KLM-ATR-010]
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYESQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=333679 FWK50_RS03375 WP_135026450.1 742067..742531(-) (ssb) [Histophilus somni strain UOC-KLM-ATR-010]
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGCAAAGGCTCAAAAGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAATGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCAGATCGTGGACAAATGGGAGGATACGAATCTCAACAGCAACCAACCTACCAATCACATTCTCAAC
CTAAACCGAGCATTGCATCTCCATCACCTGTTGATGCTCCACTTGATGATGACATTCCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.333

100

0.74
  ssb Vibrio cholerae strain A1552

52.601

100

0.591
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.506
  ssb Neisseria meningitidis MC58

44.509

100

0.5

Multiple sequence alignment