Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EO763_RS18390 Genome accession   NZ_CP034938
Coordinates   4066126..4066671 (+) Length   181 a.a.
NCBI ID   WP_010295128.1    Uniprot ID   A0AAP8X217
Organism   Pectobacterium odoriferum strain JK2.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4061126..4071671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO763_RS18380 (EO763_18665) - 4062536..4062955 (-) 420 WP_039490821.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EO763_RS18385 (EO763_18670) uvrA 4062971..4065805 (-) 2835 WP_039490819.1 excinuclease ABC subunit UvrA -
  EO763_RS18390 (EO763_18675) ssb 4066126..4066671 (+) 546 WP_010295128.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EO763_RS18395 (EO763_18680) - 4067413..4067694 (+) 282 WP_039490817.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19172.13 Da        Isoelectric Point: 5.2456

>NTDB_id=333536 EO763_RS18390 WP_010295128.1 4066126..4066671(+) (ssb) [Pectobacterium odoriferum strain JK2.1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=333536 EO763_RS18390 WP_010295128.1 4066126..4066671(+) (ssb) [Pectobacterium odoriferum strain JK2.1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTCGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACAGAAGTGGTTGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAGGGCGGCGGTGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGCCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAGCAGCGCCCTGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459

Multiple sequence alignment