Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EPD85_RS13070 Genome accession   NZ_CP034935
Coordinates   2370126..2370662 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain 79-8006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2365126..2375662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPD85_RS13035 soxR 2365681..2366145 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  EPD85_RS13040 soxS 2366231..2366554 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EPD85_RS13045 pdeC 2366557..2367036 (-) 480 Protein_2437 c-di-GMP phosphodiesterase PdeC -
  EPD85_RS13060 pdeC 2368582..2369316 (-) 735 Protein_2440 c-di-GMP phosphodiesterase PdeC -
  EPD85_RS13065 - 2369746..2370027 (+) 282 WP_001295689.1 YjcB family protein -
  EPD85_RS13070 ssb 2370126..2370662 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EPD85_RS13075 uvrA 2370916..2373738 (+) 2823 WP_000357691.1 excinuclease ABC subunit UvrA -
  EPD85_RS13080 - 2373773..2374129 (-) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  EPD85_RS13085 - 2374133..2374549 (-) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EPD85_RS13090 aphA 2374660..2375373 (-) 714 WP_005026022.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=333504 EPD85_RS13070 WP_000168305.1 2370126..2370662(-) (ssb) [Shigella dysenteriae strain 79-8006]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=333504 EPD85_RS13070 WP_000168305.1 2370126..2370662(-) (ssb) [Shigella dysenteriae strain 79-8006]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment