Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   VVMO6_RS08860 Genome accession   NC_014965
Coordinates   1895294..1895881 (-) Length   195 a.a.
NCBI ID   WP_013571962.1    Uniprot ID   -
Organism   Vibrio vulnificus MO6-24/O     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1890294..1900881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVMO6_RS08840 (VVM_03348) - 1890327..1891589 (-) 1263 WP_013571960.1 DUF945 family protein -
  VVMO6_RS08845 (VVM_03349) - 1891779..1893722 (+) 1944 WP_013571961.1 ATP-binding protein -
  VVMO6_RS08850 (VVM_03350) - 1893715..1894212 (+) 498 WP_011150095.1 response regulator -
  VVMO6_RS08855 (VVM_03351) - 1894420..1894968 (+) 549 WP_011080648.1 hypothetical protein -
  VVMO6_RS08860 (VVM_03352) tfoX 1895294..1895881 (-) 588 WP_013571962.1 TfoX/Sxy family DNA transformation protein Regulator
  VVMO6_RS08865 (VVM_03353) - 1896241..1897161 (+) 921 WP_011150094.1 HDOD domain-containing protein -
  VVMO6_RS08870 (VVM_03354) - 1897508..1898413 (+) 906 WP_013571963.1 lysine exporter LysO family protein -
  VVMO6_RS08875 (VVM_03355) - 1898611..1899123 (+) 513 WP_011150092.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22385.65 Da        Isoelectric Point: 7.9321

>NTDB_id=33346 VVMO6_RS08860 WP_013571962.1 1895294..1895881(-) (tfoX) [Vibrio vulnificus MO6-24/O]
MDMTEQAFFDYINQFGDFQKRSMFGGIGLFAEDAMFALVSNGCYYLRGGDSLDDTFCQLGCEKYRHVKKQTTATVNYYEV
SNLLDNRDGQLDRLVKQSIACSVKQRNFQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFMELGAIEVFNRVKQTYGN
DVDVKLLWKFAGAVEGIHWKLLQEPRRKQLLAACC

Nucleotide


Download         Length: 588 bp        

>NTDB_id=33346 VVMO6_RS08860 WP_013571962.1 1895294..1895881(-) (tfoX) [Vibrio vulnificus MO6-24/O]
ATGGATATGACAGAACAAGCTTTTTTTGACTACATCAACCAATTTGGTGATTTTCAGAAACGTTCAATGTTCGGTGGTAT
CGGCCTGTTTGCGGAAGATGCTATGTTTGCATTGGTGAGTAATGGTTGCTACTACCTTCGTGGTGGAGACAGTTTGGATG
ATACTTTCTGCCAATTGGGCTGTGAGAAGTATCGTCATGTCAAAAAGCAAACCACTGCTACTGTAAATTACTACGAAGTA
TCTAATCTACTTGATAATCGAGATGGTCAGTTGGATCGTTTGGTAAAGCAGTCTATAGCGTGCTCTGTAAAGCAACGTAA
TTTCCAAAAATCATCTGCCAGTCGTCGTTTAAGAGATTTACCGAACATGCAATTAACACTTGAACGCATGGTGAAAAAAG
CAGGGATTGATGACGTTGAAACCTTTATGGAATTAGGAGCGATTGAAGTCTTTAATCGAGTTAAGCAAACTTACGGTAAT
GACGTTGATGTCAAATTGCTATGGAAATTTGCTGGCGCGGTAGAAGGTATTCATTGGAAATTACTTCAAGAGCCCCGTCG
TAAACAACTTTTGGCAGCATGCTGCTAG

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(11-101)

TfoX C-terminal domain (TfoX_C)

(114-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

73.711

99.487

0.733
  tfoX Vibrio parahaemolyticus RIMD 2210633

72.68

99.487

0.723
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

70.312

98.462

0.692
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

70.312

98.462

0.692
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

70.312

98.462

0.692
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

70.312

98.462

0.692
  tfoX Vibrio cholerae strain A1552

70.312

98.462

0.692
  tfoX Aliivibrio fischeri ES114

57.068

97.949

0.559

Multiple sequence alignment