Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RMHFA_RS12040 Genome accession   NZ_CP034924
Coordinates   2615379..2615912 (-) Length   177 a.a.
NCBI ID   WP_075822127.1    Uniprot ID   -
Organism   Roseomonas mucosa strain HV1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2610379..2620912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMHFA_RS12025 (RMHFA_01784) - 2611440..2611964 (-) 525 WP_027297167.1 peptidylprolyl isomerase -
  RMHFA_RS12030 (RMHFA_01783) coaD 2612025..2612552 (-) 528 WP_019459811.1 pantetheine-phosphate adenylyltransferase -
  RMHFA_RS12035 (RMHFA_01782) gyrA 2612545..2615226 (-) 2682 WP_244311116.1 DNA gyrase subunit A -
  RMHFA_RS12040 (RMHFA_03921) ssb 2615379..2615912 (-) 534 WP_075822127.1 single-stranded DNA-binding protein Machinery gene
  RMHFA_RS12045 (RMHFA_01780) uvrA 2616326..2619328 (+) 3003 WP_226946091.1 excinuclease ABC subunit UvrA -
  RMHFA_RS12050 (RMHFA_01779) - 2619380..2620201 (-) 822 WP_099781492.1 phytoene/squalene synthase family protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18608.35 Da        Isoelectric Point: 7.0237

>NTDB_id=333457 RMHFA_RS12040 WP_075822127.1 2615379..2615912(-) (ssb) [Roseomonas mucosa strain HV1]
MAGSVNKVILVGNLGRDPEVRNFQNGGKVVNLRIATSENYKDREGNRQERTEWHSVAIFNERLGEVAEKYLRKGSTVYIE
GKLETRKWQDKDGQDRYTTEIVLRNFGGELTMIGGRASGGEGGEGGGYSGGGGGFGGGPRAGGGERGGASGGRSPSRGGG
GGGWDAPKGDLDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=333457 RMHFA_RS12040 WP_075822127.1 2615379..2615912(-) (ssb) [Roseomonas mucosa strain HV1]
ATGGCCGGCAGCGTCAACAAGGTGATCCTGGTGGGCAATCTGGGGCGCGACCCCGAGGTCCGCAACTTCCAGAACGGCGG
CAAGGTGGTGAACCTCCGCATCGCCACCAGCGAGAACTACAAGGACCGCGAGGGGAACCGCCAGGAGCGGACCGAGTGGC
ACTCGGTGGCGATCTTCAACGAGCGCCTGGGCGAGGTGGCCGAGAAGTACCTGCGCAAGGGCTCCACGGTCTATATCGAG
GGCAAGCTCGAGACCCGGAAGTGGCAGGACAAGGACGGCCAGGACCGGTACACCACCGAGATCGTGCTGCGGAACTTCGG
CGGCGAGCTGACCATGATCGGCGGCCGCGCCAGCGGCGGCGAGGGTGGTGAGGGCGGCGGCTATTCCGGCGGCGGTGGCG
GCTTCGGCGGTGGCCCGCGCGCCGGCGGCGGAGAGCGCGGCGGCGCCTCCGGCGGACGCTCGCCCTCGCGTGGTGGCGGC
GGCGGCGGCTGGGATGCGCCGAAGGGCGACCTGGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.989

100

0.486
  ssb Vibrio cholerae strain A1552

48

98.87

0.475
  ssb Neisseria meningitidis MC58

43.169

100

0.446
  ssb Neisseria gonorrhoeae MS11

40.107

100

0.424

Multiple sequence alignment