Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RMP42_RS12185 Genome accession   NZ_CP034902
Coordinates   2712173..2712709 (+) Length   178 a.a.
NCBI ID   WP_019459809.1    Uniprot ID   -
Organism   Roseomonas mucosa strain AD3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2707173..2717709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP42_RS12175 (RMP42_01779) - 2707884..2708705 (+) 822 WP_026032976.1 phytoene/squalene synthase family protein -
  RMP42_RS12180 (RMP42_01780) uvrA 2708757..2711759 (-) 3003 WP_019459808.1 excinuclease ABC subunit UvrA -
  RMP42_RS12185 (RMP42_01781) ssb 2712173..2712709 (+) 537 WP_019459809.1 single-stranded DNA-binding protein Machinery gene
  RMP42_RS12190 (RMP42_01782) gyrA 2712862..2715543 (+) 2682 WP_237719326.1 DNA gyrase subunit A -
  RMP42_RS12195 (RMP42_01783) coaD 2715536..2716063 (+) 528 WP_019459811.1 pantetheine-phosphate adenylyltransferase -
  RMP42_RS12200 (RMP42_01784) - 2716124..2716648 (+) 525 WP_027297167.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18665.40 Da        Isoelectric Point: 7.0237

>NTDB_id=333408 RMP42_RS12185 WP_019459809.1 2712173..2712709(+) (ssb) [Roseomonas mucosa strain AD3]
MAGSVNKVILVGNLGRDPEVRNFQNGGKVVNLRIATSENYKDREGNRQERTEWHSVAIFNERLGEVAEKYLRKGSTVYIE
GKLETRKWQDKDGQDRYTTEIVLRNFGGELTMIGGRASGGEGGEGGGYSGGGGGGFGGGPRAGGGERGGASGGRSPSRGG
GGGGWDAPKGDLDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=333408 RMP42_RS12185 WP_019459809.1 2712173..2712709(+) (ssb) [Roseomonas mucosa strain AD3]
ATGGCCGGCAGCGTCAACAAGGTGATCCTGGTGGGCAATCTGGGGCGCGACCCCGAGGTCCGCAACTTCCAGAACGGCGG
CAAGGTGGTGAACCTCCGCATCGCCACCAGTGAGAACTACAAGGACCGCGAGGGGAACCGCCAGGAGCGGACCGAGTGGC
ACTCGGTGGCGATCTTCAACGAGCGCCTGGGCGAGGTGGCCGAGAAGTACCTGCGCAAGGGCTCCACGGTCTATATCGAG
GGCAAGCTCGAGACCCGGAAGTGGCAGGACAAGGACGGCCAGGACCGGTACACCACCGAGATCGTGCTGCGGAACTTCGG
CGGCGAGCTGACCATGATCGGCGGCCGCGCCAGCGGCGGCGAGGGTGGTGAGGGCGGCGGCTATTCCGGCGGCGGCGGTG
GCGGCTTCGGCGGTGGCCCGCGCGCCGGCGGCGGAGAGCGCGGCGGCGCCTCCGGCGGACGCTCGCCCTCGCGCGGCGGC
GGCGGCGGCGGCTGGGATGCGCCAAAGGGCGACCTGGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.989

100

0.483
  ssb Vibrio cholerae strain A1552

47.429

98.315

0.466
  ssb Neisseria meningitidis MC58

43.169

100

0.444
  ssb Neisseria gonorrhoeae MS11

42.623

100

0.438

Multiple sequence alignment