Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D9V60_RS02780 Genome accession   NZ_CP034897
Coordinates   574044..574553 (-) Length   169 a.a.
NCBI ID   WP_158360812.1    Uniprot ID   -
Organism   Buchnera aphidicola (Aphis craccivora) strain Acr     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 569044..579553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V60_RS02760 (D9V60_02755) - 569643..571229 (-) 1587 WP_158360808.1 peptide chain release factor 3 -
  D9V60_RS02765 (D9V60_02760) ansA 571437..572450 (+) 1014 WP_158360809.1 asparaginase -
  D9V60_RS02770 (D9V60_02765) - 572498..573073 (-) 576 WP_158360810.1 NfuA family Fe-S biogenesis protein -
  D9V60_RS02775 (D9V60_02770) bioH 573209..573985 (+) 777 WP_158360811.1 pimeloyl-ACP methyl ester esterase BioH -
  D9V60_RS02780 (D9V60_02775) ssb 574044..574553 (-) 510 WP_158360812.1 single-stranded DNA-binding protein Machinery gene
  D9V60_RS02785 (D9V60_02780) dnaB 575196..576593 (+) 1398 WP_158360813.1 replicative DNA helicase -
  D9V60_RS02790 (D9V60_02785) gshB 576726..577685 (+) 960 WP_158360814.1 glutathione synthase -
  D9V60_RS02795 (D9V60_02790) ruvX 577700..578110 (+) 411 WP_158360815.1 Holliday junction resolvase RuvX -
  D9V60_RS02800 (D9V60_02795) - 578137..578814 (+) 678 WP_158360816.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19253.67 Da        Isoelectric Point: 6.7365

>NTDB_id=333405 D9V60_RS02780 WP_158360812.1 574044..574553(-) (ssb) [Buchnera aphidicola (Aphis craccivora) strain Acr]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGETKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNRNSNSNHLSINENNSILKTKKTETIDTSKNIEKYKLKKEQMDSSE
IDFDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=333405 D9V60_RS02780 WP_158360812.1 574044..574553(-) (ssb) [Buchnera aphidicola (Aphis craccivora) strain Acr]
ATGGCAAGTCGAGGTGTCAATAAAGTAATTTTAATTGGTCATTTAGGTCAAGATCCAGAAGTACGATATATGCCAAATGG
TAATGCAGTAGTAAATATGACGCTTGCAACTTCAGAAAATTGGAAAGATAAAAATACAGGTGAAACTAAAGAGAAAACAG
AATGGCATAGAGTAGTTTTATTTGGAAAGTTAGCTGAAATAGCTGGAGAATATTTACGAAAAGGTTCTCAGGTATATATT
GAAGGTTCGCTTCAAACAAGAAAGTGGCAAGACCAAAATGGTTTAGAACGATATACAACAGAAGTTATAGTAAATATTGG
TGGTACAATGCAAATGCTTGGAAACCGAAATTCTAATTCTAATCATCTTTCTATTAATGAAAATAATAGTATTTTAAAAA
CAAAAAAAACAGAAACTATTGATACATCTAAGAATATAGAAAAATATAAATTAAAAAAGGAACAAATGGATTCTTCAGAA
ATAGATTTTGATGATGAAATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.497

100

0.592
  ssb Neisseria gonorrhoeae MS11

43.182

100

0.45
  ssb Neisseria meningitidis MC58

43.182

100

0.45
  ssb Glaesserella parasuis strain SC1401

62.281

67.456

0.42

Multiple sequence alignment