Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   VVMO6_RS05350 Genome accession   NC_014965
Coordinates   1150374..1151378 (+) Length   334 a.a.
NCBI ID   WP_011080039.1    Uniprot ID   A0A3Q0L4Y8
Organism   Vibrio vulnificus MO6-24/O     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1145374..1156378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVMO6_RS05330 (VVM_02001) aspS 1145726..1147504 (+) 1779 WP_011080035.1 aspartate--tRNA ligase -
  VVMO6_RS05335 (VVM_02005) ruvC 1147571..1148092 (+) 522 WP_011150789.1 crossover junction endodeoxyribonuclease RuvC -
  VVMO6_RS05340 (VVM_02006) - 1148207..1149667 (+) 1461 WP_013571416.1 methyl-accepting chemotaxis protein -
  VVMO6_RS05345 (VVM_02008) ruvA 1149738..1150352 (+) 615 WP_011080038.1 Holliday junction branch migration protein RuvA -
  VVMO6_RS05350 (VVM_02010) ruvB 1150374..1151378 (+) 1005 WP_011080039.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VVMO6_RS05355 (VVM_02014) cydA 1151841..1153427 (+) 1587 WP_013571418.1 cytochrome ubiquinol oxidase subunit I -
  VVMO6_RS05360 (VVM_02017) cydB 1153444..1154580 (+) 1137 WP_011080041.1 cytochrome d ubiquinol oxidase subunit II -
  VVMO6_RS22655 cydX 1154593..1154700 (+) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  VVMO6_RS05370 ybgE 1154693..1154995 (+) 303 WP_044023823.1 cyd operon protein YbgE -
  VVMO6_RS05375 (VVM_02020) ybgC 1155140..1155559 (+) 420 WP_011080043.1 tol-pal system-associated acyl-CoA thioesterase -
  VVMO6_RS05380 (VVM_02022) tolQ 1155549..1156232 (+) 684 WP_011080044.1 protein TolQ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37126.56 Da        Isoelectric Point: 4.8134

>NTDB_id=33340 VVMO6_RS05350 WP_011080039.1 1150374..1151378(+) (ruvB) [Vibrio vulnificus MO6-24/O]
MIEADRLIAPDNPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKIPDLQNIVQRSADCLGLSMEAEGALEVARRARGTPRIANRLLRRVRDFAEVKG
NGHICADTADKALNMLDVDSKGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=33340 VVMO6_RS05350 WP_011080039.1 1150374..1151378(+) (ruvB) [Vibrio vulnificus MO6-24/O]
ATGATTGAAGCAGATCGCTTAATTGCTCCGGACAATCCCGCTTTTCGTGATGAAGATGTGATTGACCGCGCGATACGACC
AAAGAAACTCGCCGATTACCAAGGCCAAGATCACGTACGTGATCAAATGGAAATTTTTATTAAAGCCGCGCAATTGCGTA
ACGAAGCGCTCGACCATTTATTGATTTTTGGCCCTCCAGGTTTGGGTAAAACCACCTTAGCGAACATTGTTGCAAACGAG
ATGGGCGTAAATATTCGCACCACGTCAGGACCGGTGTTAGAAAAAGCGGGAGATTTAGCGGCCTTGCTGACCAATCTTGA
AGAAAACGACGTGCTCTTCATTGATGAGATACACCGACTCAGCCCGATGGTGGAAGAAGTGCTGTATCCAGCCATGGAAG
ATTACCAATTGGATATTATGATTGGTGAAGGCCCTGCTGCACGTTCAATCAAAATCGATTTGCCGCCTTTTACGCTAATT
GGTGCAACCACTCGTGCCGGCTCACTGACTTCCCCTCTGCGTGATCGTTTTGGTATTACCCAGCGTTTGGAGTATTACAA
AATTCCTGATCTGCAGAATATCGTGCAACGCAGTGCTGACTGCTTGGGGCTTTCCATGGAAGCGGAAGGGGCATTAGAGG
TGGCGCGTCGTGCGCGTGGTACACCACGTATTGCCAATCGCTTGTTGCGCCGCGTACGCGATTTTGCTGAAGTAAAAGGC
AATGGTCACATCTGTGCAGACACCGCAGACAAAGCGCTCAACATGCTCGATGTGGACTCGAAAGGTTTTGATTACATGGA
CCGCAAGTTGCTGTTGGCCATCATGGAGAAATTTGGTGGTGGTCCGGTAGGCTTGGATAACATGGCAGCCGCGATCGGTG
AAGAGAAAGACACGATTGAAGATGTGTTAGAGCCATATTTGATTCAGCAGGGTTATTTACAACGCACGCCTCGAGGGCGA
ATCGCAACCGATCGGGCGTATCTTCATTTCGGAATTGAAAAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L4Y8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.79

98.503

0.599
  ruvB Streptococcus pneumoniae TIGR4

59.752

96.707

0.578
  ruvB Streptococcus pneumoniae R6

59.752

96.707

0.578
  ruvB Streptococcus pneumoniae D39

59.752

96.707

0.578
  ruvB Synechocystis sp. PCC 6803

55.016

92.515

0.509
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494

Multiple sequence alignment