Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FWK43_RS06965 Genome accession   NZ_CP042983
Coordinates   1573417..1574022 (-) Length   201 a.a.
NCBI ID   WP_011609462.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1568417..1579022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK43_RS06955 (FWK43_06955) - 1569910..1571968 (+) 2059 Protein_1362 TonB-dependent receptor domain-containing protein -
  FWK43_RS06960 (FWK43_06960) tyrS 1572182..1573369 (+) 1188 WP_011609461.1 tyrosine--tRNA ligase -
  FWK43_RS06965 (FWK43_06965) recR 1573417..1574022 (-) 606 WP_011609462.1 recombination mediator RecR Machinery gene
  FWK43_RS06970 (FWK43_06970) - 1574085..1574414 (-) 330 WP_011609463.1 YbaB/EbfC family nucleoid-associated protein -
  FWK43_RS06975 (FWK43_06975) - 1574540..1576435 (+) 1896 WP_132994774.1 DNA topoisomerase III -
  FWK43_RS06980 (FWK43_06980) secG 1576577..1576921 (+) 345 WP_132994775.1 preprotein translocase subunit SecG -
  FWK43_RS06990 (FWK43_06990) secF 1577496..1578464 (-) 969 WP_012341171.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22124.28 Da        Isoelectric Point: 6.3979

>NTDB_id=333366 FWK43_RS06965 WP_011609462.1 1573417..1574022(-) (recR) [Histophilus somni strain UOC-KLM-ATR-01]
MQSSPLLENLIEHLRCLPGVGPKSAQRMAYHLLQRDRSGGMNLAGALTEAMSKIGHCTHCRTFTEEESCAICNNPRRQNS
GFLCVVEQPSDIPAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLQHESFYEVILATNPTVEGEATANYIAEM
CFQHNIKVSRIAHGIPIGGELETVDGTTLSHSLIGRREIQL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=333366 FWK43_RS06965 WP_011609462.1 1573417..1574022(-) (recR) [Histophilus somni strain UOC-KLM-ATR-01]
ATGCAAAGCAGTCCTCTTTTAGAAAATCTGATTGAACATTTACGTTGTTTACCCGGCGTTGGTCCTAAATCCGCACAGCG
TATGGCATATCATTTATTGCAACGTGATCGTAGCGGTGGTATGAATTTAGCTGGTGCTTTAACCGAAGCGATGTCGAAAA
TTGGTCATTGTACTCATTGCCGCACTTTTACGGAAGAAGAGAGTTGTGCAATTTGTAATAATCCAAGACGACAAAATTCG
GGTTTTCTTTGTGTTGTGGAACAGCCTTCCGATATTCCGGCTATTGAGCAAACAGGGCAATTTTCCGGGCGATATTTTGT
GTTAATGGGACATTTATCTCCTTTAGATGGGATTGGTCCGAAAGAAATCGGTTTGGATTTATTGCAAAAGCGGTTACAAC
ATGAAAGTTTTTATGAAGTTATTTTGGCAACCAATCCAACTGTTGAAGGCGAGGCAACAGCGAATTATATTGCGGAAATG
TGTTTTCAACATAATATAAAGGTCAGCCGTATTGCTCATGGTATCCCTATAGGAGGGGAATTGGAAACAGTTGACGGTAC
AACTTTAAGTCATTCACTTATTGGGCGTCGTGAAATTCAACTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.005

0.448
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.005

0.428

Multiple sequence alignment