Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D9V77_RS02730 Genome accession   NZ_CP034855
Coordinates   576950..577462 (-) Length   170 a.a.
NCBI ID   WP_158338989.1    Uniprot ID   A0A4D6YJC8
Organism   Buchnera aphidicola (Sitobion avenae) strain Sav     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 571950..582462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V77_RS02720 (D9V77_02710) - 572967..574550 (-) 1584 WP_158338832.1 peptide chain release factor 3 -
  D9V77_RS02725 (D9V77_02715) - 575694..576272 (-) 579 WP_158338834.1 NfuA family Fe-S biogenesis protein -
  D9V77_RS02730 (D9V77_02720) ssb 576950..577462 (-) 513 WP_158338989.1 single-stranded DNA-binding protein Machinery gene
  D9V77_RS02735 (D9V77_02725) dnaB 578085..579482 (+) 1398 WP_158338836.1 replicative DNA helicase -
  D9V77_RS02740 (D9V77_02730) gshB 579791..580753 (+) 963 WP_158338838.1 glutathione synthase -
  D9V77_RS02745 (D9V77_02735) ruvX 580764..581183 (+) 420 WP_158338840.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19320.74 Da        Isoelectric Point: 6.6504

>NTDB_id=333366 D9V77_RS02730 WP_158338989.1 576950..577462(-) (ssb) [Buchnera aphidicola (Sitobion avenae) strain Sav]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEIIVNIGGTMQMLGSRNSNVQAMSTHDNNNTVMKAQKIDKVNFDKNIETHKPNKDLIHSS
EIDFDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=333366 D9V77_RS02730 WP_158338989.1 576950..577462(-) (ssb) [Buchnera aphidicola (Sitobion avenae) strain Sav]
ATGGCAAGTAGAGGTGTAAATAAAGTTATTCTTATTGGACATTTAGGACAAGATCCTGAAGTGCGTTATATGCCAAATGG
TAATGCAGTAGTAAATATGACTTTGGCTACTTCAGAAAATTGGAAAGATAAAAACACTGGTGAAAATAAAGAAAAAACAG
AATGGCATCGTATAGTTTTGTTTGGAAAATTAGCAGAAATCGCTGGAGAATATTTAAGAAAAGGTTCTCAAGTATATATT
GAAGGTTCATTACAAACTAGAAAGTGGCAAGATCAAAATGGACTCGAACGTTATACTACAGAAATAATTGTAAACATTGG
TGGTACTATGCAAATGTTAGGTAGTCGTAATTCTAACGTGCAAGCAATGTCAACACATGATAATAATAATACTGTAATGA
AAGCACAAAAAATAGACAAAGTAAATTTTGATAAAAATATAGAAACACATAAACCTAACAAAGATTTAATTCATTCTTCA
GAAATAGATTTTGATGATGAGATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D6YJC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.222

100

0.606
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.518
  ssb Neisseria gonorrhoeae MS11

42.614

100

0.441
  ssb Neisseria meningitidis MC58

42.614

100

0.441

Multiple sequence alignment