Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EOJ32_RS08475 Genome accession   NZ_CP034810
Coordinates   1707384..1707896 (-) Length   170 a.a.
NCBI ID   WP_127898262.1    Uniprot ID   -
Organism   Paracoccus sp. Arc7-R13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1702384..1712896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EOJ32_RS08455 (EOJ32_08450) - 1702635..1704095 (-) 1461 WP_127898258.1 hypothetical protein -
  EOJ32_RS20115 - 1704088..1704252 (-) 165 WP_164871414.1 hypothetical protein -
  EOJ32_RS08460 (EOJ32_08455) - 1704379..1704930 (+) 552 WP_240542382.1 shikimate kinase -
  EOJ32_RS08465 (EOJ32_08460) aroB 1704927..1706033 (+) 1107 WP_127898260.1 3-dehydroquinate synthase -
  EOJ32_RS08470 (EOJ32_08465) - 1706110..1707156 (-) 1047 WP_127898261.1 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein -
  EOJ32_RS08475 (EOJ32_08470) ssb 1707384..1707896 (-) 513 WP_127898262.1 single-stranded DNA-binding protein Machinery gene
  EOJ32_RS08480 (EOJ32_08475) - 1708070..1708690 (+) 621 WP_045999444.1 lytic transglycosylase domain-containing protein -
  EOJ32_RS08485 (EOJ32_08480) - 1708694..1709215 (-) 522 WP_240542383.1 lytic transglycosylase domain-containing protein -
  EOJ32_RS08490 (EOJ32_08485) lpdA 1709208..1710596 (-) 1389 WP_127898263.1 dihydrolipoyl dehydrogenase -
  EOJ32_RS08495 (EOJ32_08490) - 1710659..1711060 (-) 402 WP_127898264.1 MAPEG family protein -
  EOJ32_RS08500 (EOJ32_08495) - 1711060..1711314 (-) 255 WP_127898265.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 17825.52 Da        Isoelectric Point: 5.9567

>NTDB_id=333256 EOJ32_RS08475 WP_127898262.1 1707384..1707896(-) (ssb) [Paracoccus sp. Arc7-R13]
MAGSVNKVILVGNLGRDPEIRSFQNGGKVANLRIATSENWKDRTTGERKERTEWHTVAIFNEGLVGVVERYLKKGSKVYV
EGQLETRKWQDQSGQDRYSTEIVLRGIGGTLTMLDGASGGGGGMGGGGMGGGGRDSGGYDDYNQGGGSSSRGGGGGQGGG
RADYDDEIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=333256 EOJ32_RS08475 WP_127898262.1 1707384..1707896(-) (ssb) [Paracoccus sp. Arc7-R13]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGCCGCGACCCGGAAATCCGCAGCTTTCAGAACGGCGG
CAAGGTCGCGAACCTGCGCATCGCCACCTCCGAGAACTGGAAGGACCGCACCACCGGAGAGCGCAAGGAGCGCACCGAGT
GGCACACCGTCGCCATCTTCAACGAGGGCCTGGTGGGCGTCGTCGAACGCTATCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGCCAGCTGGAAACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACCGCTACTCGACCGAGATCGTCCTGCGCGGCAT
CGGCGGCACGCTGACCATGCTGGACGGCGCCAGCGGCGGTGGCGGCGGCATGGGTGGTGGCGGCATGGGCGGCGGTGGTC
GCGACAGCGGCGGCTACGACGACTATAACCAGGGCGGCGGATCGTCGTCGCGCGGCGGCGGCGGCGGCCAGGGCGGCGGA
CGCGCCGATTACGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.404

100

0.535
  ssb Vibrio cholerae strain A1552

49.711

100

0.506
  ssb Neisseria meningitidis MC58

36.464

100

0.388
  ssb Neisseria gonorrhoeae MS11

36.464

100

0.388

Multiple sequence alignment