Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FVF73_RS21120 Genome accession   NZ_CP042934
Coordinates   4351884..4352420 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli 042     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4346884..4357420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVF73_RS21100 (FVF73_21110) aphA 4347173..4347886 (+) 714 WP_001307512.1 acid phosphatase AphA -
  FVF73_RS21105 (FVF73_21115) yjbQ 4347997..4348413 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FVF73_RS21110 (FVF73_21120) yjbR 4348417..4348773 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FVF73_RS21115 (FVF73_21125) uvrA 4348808..4351630 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  FVF73_RS21120 (FVF73_21130) ssb 4351884..4352420 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FVF73_RS21125 (FVF73_21135) yjcB 4352519..4352800 (-) 282 WP_001295689.1 YjcB family protein -
  FVF73_RS21130 (FVF73_21140) pdeC 4353230..4354105 (+) 876 Protein_4114 c-di-GMP phosphodiesterase PdeC -
  FVF73_RS21135 (FVF73_21145) - 4354161..4354858 (+) 698 WP_226926670.1 IS1 family transposase -
  FVF73_RS21140 (FVF73_21150) pdeC 4354873..4355592 (+) 720 Protein_4116 c-di-GMP phosphodiesterase PdeC -
  FVF73_RS21145 (FVF73_21155) soxS 4355595..4355918 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  FVF73_RS21150 (FVF73_21160) soxR 4356004..4356468 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=333165 FVF73_RS21120 WP_000168305.1 4351884..4352420(+) (ssb) [Escherichia coli 042]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=333165 FVF73_RS21120 WP_000168305.1 4351884..4352420(+) (ssb) [Escherichia coli 042]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489