Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ELQ88_RS31205 Genome accession   NZ_CP034783
Coordinates   6268271..6268795 (-) Length   174 a.a.
NCBI ID   WP_007896798.1    Uniprot ID   A0A423J1F9
Organism   Pseudomonas sp. MPC6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6263271..6273795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELQ88_RS31190 (ELQ88_31190) - 6264082..6265074 (-) 993 WP_128872495.1 GlxA family transcriptional regulator -
  ELQ88_RS31195 (ELQ88_31195) - 6265176..6265730 (+) 555 WP_128872496.1 cysteine hydrolase family protein -
  ELQ88_RS31200 (ELQ88_31200) - 6265880..6268084 (+) 2205 WP_128872497.1 OsmC domain/YcaO domain-containing protein -
  ELQ88_RS31205 (ELQ88_31205) ssb 6268271..6268795 (-) 525 WP_007896798.1 single-stranded DNA-binding protein Machinery gene
  ELQ88_RS31210 (ELQ88_31210) - 6268805..6270202 (-) 1398 WP_138969238.1 MFS transporter -
  ELQ88_RS31215 (ELQ88_31215) uvrA 6270394..6273228 (+) 2835 WP_138969239.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19299.44 Da        Isoelectric Point: 5.9314

>NTDB_id=333006 ELQ88_RS31205 WP_007896798.1 6268271..6268795(-) (ssb) [Pseudomonas sp. MPC6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRPAPQQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=333006 ELQ88_RS31205 WP_007896798.1 6268271..6268795(-) (ssb) [Pseudomonas sp. MPC6]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCGAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAAAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTGGCGGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAGGTTTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGCAGGGCGATCAACAAGGCGGGGGCAATAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAACAGGCTCCGCGTCCACAGCAGTCGGCACCGCAACAGTCGCGTCCGGCGCCACAGCAGCAGGCCGCTCCGCAG
CCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A423J1F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.598
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.511
  ssb Neisseria meningitidis MC58

47.514

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.494

Multiple sequence alignment