Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ELX51_RS05740 Genome accession   NZ_CP034767
Coordinates   1189772..1190275 (+) Length   167 a.a.
NCBI ID   WP_127752623.1    Uniprot ID   -
Organism   Devosia sp. 1566     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1184772..1195275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELX51_RS05730 - 1185813..1185962 (-) 150 WP_127752621.1 DUF1127 domain-containing protein -
  ELX51_RS19980 - 1186160..1186312 (-) 153 WP_164854773.1 hypothetical protein -
  ELX51_RS05735 uvrA 1186420..1189311 (-) 2892 WP_127752622.1 excinuclease ABC subunit UvrA -
  ELX51_RS05740 ssb 1189772..1190275 (+) 504 WP_127752623.1 single-stranded DNA-binding protein Machinery gene
  ELX51_RS05745 - 1190533..1191741 (+) 1209 WP_127752624.1 tyrosine-type recombinase/integrase -
  ELX51_RS05750 - 1191738..1193297 (+) 1560 WP_127752625.1 site-specific integrase -
  ELX51_RS05755 - 1193294..1195264 (+) 1971 WP_127752626.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17810.60 Da        Isoelectric Point: 5.9664

>NTDB_id=332930 ELX51_RS05740 WP_127752623.1 1189772..1190275(+) (ssb) [Devosia sp. 1566]
MAGSVNKVILVGNLGNDPEVRNLPSGGKVVNLSIATSENWKDKNTGERREKTEWHRVVIFSEGLARVAESYLKKGSKVYI
EGQLQTRKWQDQSGQDKYSTEIVLQGFNSNLTLLDGRGEGEGAGGGEPGGFRGARQSDNNGGGGGGRRPSPSAPAFESGG
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=332930 ELX51_RS05740 WP_127752623.1 1189772..1190275(+) (ssb) [Devosia sp. 1566]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTAGGCAATCTGGGCAACGACCCCGAAGTGCGCAATCTTCCCAGCGGCGG
CAAGGTGGTCAATCTGTCCATCGCCACCTCGGAAAACTGGAAAGACAAGAACACCGGCGAGCGGCGCGAAAAGACCGAAT
GGCACCGGGTGGTGATCTTTTCGGAAGGTCTGGCGCGTGTAGCCGAAAGTTACCTCAAAAAGGGCTCCAAGGTTTACATC
GAAGGCCAGCTTCAAACCCGCAAATGGCAGGACCAAAGCGGGCAGGACAAATACTCCACCGAGATTGTGCTGCAGGGCTT
CAACTCTAACCTTACGCTGCTCGACGGCCGCGGCGAGGGTGAAGGGGCAGGGGGCGGCGAGCCCGGCGGCTTCCGTGGCG
CCCGCCAGTCCGACAACAACGGTGGTGGTGGCGGCGGCCGCCGCCCATCCCCGAGCGCCCCAGCCTTTGAGTCCGGCGGC
ATGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.889

100

0.581
  ssb Glaesserella parasuis strain SC1401

51.613

100

0.575
  ssb Neisseria meningitidis MC58

40.884

100

0.443
  ssb Neisseria gonorrhoeae MS11

40.884

100

0.443

Multiple sequence alignment