Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EKN56_RS16525 Genome accession   NZ_CP034752
Coordinates   3705927..3706433 (-) Length   168 a.a.
NCBI ID   WP_130592791.1    Uniprot ID   A0A9X1SIX0
Organism   Limnobaculum zhutongyuii strain CF-458     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3700927..3711433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKN56_RS16495 (EKN56_16495) - 3701520..3702133 (+) 614 Protein_3268 LysE family translocator -
  EKN56_RS16500 (EKN56_16500) - 3702134..3702907 (-) 774 WP_130592786.1 helix-turn-helix domain-containing protein -
  EKN56_RS16505 (EKN56_16505) - 3703037..3703948 (+) 912 WP_130592787.1 DMT family transporter -
  EKN56_RS16510 (EKN56_16510) - 3704074..3704403 (+) 330 WP_130592788.1 hypothetical protein -
  EKN56_RS16515 (EKN56_16515) - 3704512..3705021 (-) 510 WP_130592789.1 dCMP deaminase family protein -
  EKN56_RS16520 (EKN56_16520) - 3705095..3705802 (-) 708 WP_130592790.1 hypothetical protein -
  EKN56_RS16525 (EKN56_16525) ssb 3705927..3706433 (-) 507 WP_130592791.1 single-stranded DNA-binding protein Machinery gene
  EKN56_RS16530 (EKN56_16530) - 3706616..3707263 (-) 648 WP_185955879.1 tellurite resistance TerB family protein -
  EKN56_RS16535 (EKN56_16535) uvrA 3707587..3710418 (+) 2832 WP_130592793.1 excinuclease ABC subunit UvrA -
  EKN56_RS16540 (EKN56_16540) - 3710610..3711227 (+) 618 WP_130592794.1 LemA family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18506.52 Da        Isoelectric Point: 4.9567

>NTDB_id=332840 EKN56_RS16525 WP_130592791.1 3705927..3706433(-) (ssb) [Limnobaculum zhutongyuii strain CF-458]
MASRGINKVILVGNLGQDPEIRYMPNGGAVANITIATSESWRDKQTGEQKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGVMQMLGGRQGGGEGQSAQGSWGQPQQPQQSQAQASRPAQQQSAPMQQNEPPM
DFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=332840 EKN56_RS16525 WP_130592791.1 3705927..3706433(-) (ssb) [Limnobaculum zhutongyuii strain CF-458]
ATGGCCAGCAGAGGCATCAATAAAGTAATTCTAGTCGGAAATCTGGGTCAGGACCCGGAAATTCGTTATATGCCTAATGG
TGGTGCGGTGGCGAATATTACCATTGCGACTTCTGAGAGCTGGCGTGATAAGCAAACCGGTGAGCAAAAAGAAAAAACCG
AATGGCACCGTGTGGTGATTTTCGGCAAATTAGCCGAAATTGCAGGTGAATACCTGCGTAAAGGTTCACAGGTTTATATC
GAAGGTTCTCTGCAAACTCGTAAGTGGCAAGACCAGAGCGGTCAGGATCGCTACACCACTGAAGTTGTGGTTAACATTGG
CGGCGTAATGCAAATGTTGGGTGGCCGTCAGGGCGGCGGTGAAGGTCAGTCAGCTCAGGGTAGCTGGGGCCAACCACAGC
AGCCGCAGCAATCACAGGCGCAGGCATCTCGTCCGGCTCAGCAACAAAGCGCACCAATGCAGCAAAATGAACCACCAATG
GATTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.446

100

0.774
  ssb Glaesserella parasuis strain SC1401

56.593

100

0.613
  ssb Neisseria meningitidis MC58

46.591

100

0.488
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.488

Multiple sequence alignment