Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SPP_RS10255 | Genome accession | NC_012467 |
| Coordinates | 1905765..1906718 (-) | Length | 317 a.a. |
| NCBI ID | WP_000345116.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae P1031 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1900765..1911718
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPP_RS10230 (SPP_2075) | - | 1901526..1902149 (-) | 624 | WP_000932635.1 | hypothetical protein | - |
| SPP_RS10235 (SPP_2076) | jag | 1902200..1903186 (-) | 987 | WP_000260015.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| SPP_RS10240 (SPP_2077) | - | 1903205..1904029 (-) | 825 | WP_000727904.1 | membrane protein insertase YidC | - |
| SPP_RS10245 (SPP_2078) | rnpA | 1904004..1904375 (-) | 372 | WP_000739246.1 | ribonuclease P protein component | - |
| SPP_RS13780 (SPP_2079) | - | 1904392..1904523 (-) | 132 | WP_000768904.1 | hypothetical protein | - |
| SPP_RS10250 (SPP_2080) | - | 1904524..1905714 (-) | 1191 | WP_000167766.1 | acetate kinase | - |
| SPP_RS10255 (SPP_2081) | comYH | 1905765..1906718 (-) | 954 | WP_000345116.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SPP_RS12415 | - | 1906779..1907373 (-) | 595 | Protein_1944 | class I SAM-dependent methyltransferase | - |
| SPP_RS10270 (SPP_2085) | comGG/cglG | 1907510..1907923 (-) | 414 | WP_000265631.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| SPP_RS10275 (SPP_2086) | comGF/cglF | 1907901..1908362 (-) | 462 | WP_000250531.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SPP_RS10280 (SPP_2087) | comGE/cglE | 1908325..1908627 (-) | 303 | WP_000413382.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SPP_RS10285 (SPP_2088) | comGD/cglD | 1908590..1908994 (-) | 405 | WP_000588020.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SPP_RS10290 (SPP_2089) | comGC/cglC | 1908987..1909313 (-) | 327 | WP_000738633.1 | comG operon protein ComGC | Machinery gene |
| SPP_RS10295 (SPP_2090) | comGB/cglB | 1909315..1910331 (-) | 1017 | WP_001844679.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SPP_RS10300 (SPP_2091) | comGA/cglA/cilD | 1910279..1911220 (-) | 942 | WP_000249571.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SPP_RS10305 (SPP_2092) | - | 1911296..1911661 (-) | 366 | WP_000286415.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35623.84 Da Isoelectric Point: 4.3256
>NTDB_id=33260 SPP_RS10255 WP_000345116.1 1905765..1906718(-) (comYH) [Streptococcus pneumoniae P1031]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKHLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKHLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=33260 SPP_RS10255 WP_000345116.1 1905765..1906718(-) (comYH) [Streptococcus pneumoniae P1031]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCATTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCATTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
54.952 |
98.738 |
0.543 |
| comYH | Streptococcus mutans UA159 |
54.633 |
98.738 |
0.539 |