Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HICON_RS03770 Genome accession   NC_014922
Coordinates   765702..766304 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae F3047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 760702..771304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HICON_RS03750 (HICON_09690) - 761063..762733 (+) 1671 WP_006995140.1 fructose-specific PTS transporter subunit EIIC -
  HICON_RS03760 (HICON_09700) secG 763281..763622 (-) 342 WP_005691381.1 preprotein translocase subunit SecG -
  HICON_RS03765 (HICON_09710) - 763731..765686 (-) 1956 WP_006995139.1 DNA topoisomerase III -
  HICON_RS03770 (HICON_09720) recR 765702..766304 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  HICON_RS03775 (HICON_09730) - 766435..766764 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  HICON_RS03780 (HICON_09740) - 766933..767778 (-) 846 WP_013527433.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  HICON_RS03785 (HICON_09750) - 767851..770445 (-) 2595 WP_013527434.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=33261 HICON_RS03770 WP_005626527.1 765702..766304(-) (recR) [Haemophilus influenzae F3047]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=33261 HICON_RS03770 WP_005626527.1 765702..766304(-) (recR) [Haemophilus influenzae F3047]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCCGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGGCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACGGTGGAGGGCGATGCGACGGCAAACTATATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCGGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment