Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   SPP_RS10270 Genome accession   NC_012467
Coordinates   1907510..1907923 (-) Length   137 a.a.
NCBI ID   WP_000265631.1    Uniprot ID   -
Organism   Streptococcus pneumoniae P1031     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1902510..1912923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPP_RS10240 (SPP_2077) - 1903205..1904029 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  SPP_RS10245 (SPP_2078) rnpA 1904004..1904375 (-) 372 WP_000739246.1 ribonuclease P protein component -
  SPP_RS13780 (SPP_2079) - 1904392..1904523 (-) 132 WP_000768904.1 hypothetical protein -
  SPP_RS10250 (SPP_2080) - 1904524..1905714 (-) 1191 WP_000167766.1 acetate kinase -
  SPP_RS10255 (SPP_2081) comYH 1905765..1906718 (-) 954 WP_000345116.1 class I SAM-dependent methyltransferase Machinery gene
  SPP_RS12415 - 1906779..1907373 (-) 595 Protein_1944 class I SAM-dependent methyltransferase -
  SPP_RS10270 (SPP_2085) comGG/cglG 1907510..1907923 (-) 414 WP_000265631.1 competence type IV pilus minor pilin ComGG Machinery gene
  SPP_RS10275 (SPP_2086) comGF/cglF 1907901..1908362 (-) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPP_RS10280 (SPP_2087) comGE/cglE 1908325..1908627 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPP_RS10285 (SPP_2088) comGD/cglD 1908590..1908994 (-) 405 WP_000588020.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPP_RS10290 (SPP_2089) comGC/cglC 1908987..1909313 (-) 327 WP_000738633.1 comG operon protein ComGC Machinery gene
  SPP_RS10295 (SPP_2090) comGB/cglB 1909315..1910331 (-) 1017 WP_001844679.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPP_RS10300 (SPP_2091) comGA/cglA/cilD 1910279..1911220 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  SPP_RS10305 (SPP_2092) - 1911296..1911661 (-) 366 WP_000286415.1 DUF1033 family protein -
  SPP_RS10310 (SPP_2093) - 1911812..1912870 (-) 1059 WP_000649471.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15892.33 Da        Isoelectric Point: 10.2476

>NTDB_id=33261 SPP_RS10270 WP_000265631.1 1907510..1907923(-) (comGG/cglG) [Streptococcus pneumoniae P1031]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=33261 SPP_RS10270 WP_000265631.1 1907510..1907923(-) (comGG/cglG) [Streptococcus pneumoniae P1031]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCTATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

86.131

100

0.861

  comGG/cglG Streptococcus pneumoniae Rx1

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae D39

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae R6

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

85.401

0.81

  comGG/cglG Streptococcus mitis NCTC 12261

90.909

88.321

0.803

  comYG Streptococcus mutans UA140

39.552

97.81

0.387

  comYG Streptococcus mutans UA159

39.552

97.81

0.387


Multiple sequence alignment