Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EKQ63_RS28925 Genome accession   NZ_CP034686
Coordinates   5106843..5107355 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus sp. BD59S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5101843..5112355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS28905 (EKQ63_28875) rplI 5103053..5103499 (-) 447 WP_087995277.1 50S ribosomal protein L9 -
  EKQ63_RS28910 (EKQ63_28880) - 5103496..5105469 (-) 1974 WP_087955261.1 DHH family phosphoesterase -
  EKQ63_RS28915 (EKQ63_28885) - 5105548..5106483 (-) 936 WP_140421294.1 YybS family protein -
  EKQ63_RS28920 (EKQ63_28890) rpsR 5106564..5106797 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  EKQ63_RS28925 (EKQ63_28895) ssbA 5106843..5107355 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  EKQ63_RS28930 (EKQ63_28900) rpsF 5107382..5107672 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  EKQ63_RS28935 (EKQ63_28905) ychF 5107864..5108964 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  EKQ63_RS28940 (EKQ63_28910) - 5109079..5109276 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  EKQ63_RS28945 (EKQ63_28915) - 5109297..5110178 (-) 882 WP_087955263.1 mechanosensitive ion channel family protein -
  EKQ63_RS28950 (EKQ63_28920) yyaC 5110438..5111034 (+) 597 WP_087955264.1 spore protease YyaC -
  EKQ63_RS28955 (EKQ63_28925) spo0J 5111055..5111906 (-) 852 WP_087955265.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=332516 EKQ63_RS28925 WP_000981966.1 5106843..5107355(-) (ssbA) [Bacillus sp. BD59S]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=332516 EKQ63_RS28925 WP_000981966.1 5106843..5107355(-) (ssbA) [Bacillus sp. BD59S]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGCGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394

Multiple sequence alignment