Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ELB75_RS05660 Genome accession   NZ_CP034670
Coordinates   1127383..1129500 (+) Length   705 a.a.
NCBI ID   WP_206501495.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1122383..1134500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS05640 (ELB75_05640) pilM 1124379..1125479 (+) 1101 WP_241236116.1 type IV pilus assembly protein PilM -
  ELB75_RS05645 (ELB75_05645) - 1125481..1126167 (+) 687 WP_126983084.1 PilN domain-containing protein -
  ELB75_RS05650 (ELB75_05650) pilO 1126183..1126797 (+) 615 WP_126983085.1 type 4a pilus biogenesis protein PilO -
  ELB75_RS05655 (ELB75_05655) - 1126828..1127361 (+) 534 WP_164726817.1 pilus assembly protein PilP -
  ELB75_RS05660 (ELB75_05660) pilQ 1127383..1129500 (+) 2118 WP_206501495.1 type IV pilus secretin family protein Machinery gene
  ELB75_RS05665 (ELB75_05665) - 1129530..1130078 (+) 549 WP_126983086.1 shikimate kinase -
  ELB75_RS05670 (ELB75_05670) aroB 1130078..1131154 (+) 1077 WP_126983087.1 3-dehydroquinate synthase -
  ELB75_RS05675 (ELB75_05675) - 1131407..1131814 (+) 408 WP_126983088.1 hypothetical protein -
  ELB75_RS05680 (ELB75_05680) - 1132365..1132949 (+) 585 WP_126983089.1 phosphatase PAP2 family protein -
  ELB75_RS05685 (ELB75_05685) - 1133122..1133487 (-) 366 WP_126983090.1 hypothetical protein -

Sequence

Protein


Download         Length: 705 a.a.        Molecular weight: 76495.63 Da        Isoelectric Point: 9.6996

>NTDB_id=332328 ELB75_RS05660 WP_206501495.1 1127383..1129500(+) (pilQ) [Eikenella corrodens strain KCOM 3110]
MKIKKLQYLTALGMSLAMQGVLAGNITDINVSALPNNQKVIKIRFDRDMLKPSGFITTTPARIALDFPNTGANLNQPVLQ
YNDALLNQIAVAQDSNKTRVLLNLNRPGQYNAEVRGNEVWIYLNESGQGVSTTVRAAPPSNQIQQESLGITETRPAAGQN
ALGSNTANVAVDFHKGASNSGVIEINTAGYRGTPEIKQRSNNLVILLKNNQLPIAAQRNLDVTDFSTPVRTISLRRLGND
TEITIKNQGGWEHKTSQSAGRYTITVSPKSVVAEDGLRNRNHHFTGKRVSLDFQDVDVRTILQILAKESNMNIVASDSVS
GKMTLSLKDVPWDQALDLVMQSRGLESRRNGNIIRVAPAEEFRKIDVETLENAKRIEELGPLVSRTFQLKYKDVNEFRKI
LNINENGGSNTGNNNSLLSNRGSAVIDPATNTLIIKDNQNVIKEFERLIEQLDVPARQVMIEARIVEATDGFSRALGVKF
GYNKTSGSTQIGSGLGTNNGGTGTAFSIAPNVNLPAAAATSSITIVRALSSGALGLELTAMQEQNRGKIISSPRVLTQDR
KEATIKAGREIPYQEASSSGATSTSFKEAVLGLTVTPQITPDGNVIMDIKLNKDSVDQGCSVLGTPCISTKELNTRAMVE
DGGTIILGGIYEEDNSNSQYKVPLLGDIPVVGNLFRGTKRNNSKNELLIFITPRIMGTEGNVLRY

Nucleotide


Download         Length: 2118 bp        

>NTDB_id=332328 ELB75_RS05660 WP_206501495.1 1127383..1129500(+) (pilQ) [Eikenella corrodens strain KCOM 3110]
ATGAAAATCAAAAAACTGCAATATCTAACCGCTTTAGGTATGAGCTTGGCCATGCAAGGCGTACTGGCTGGTAATATTAC
AGATATTAACGTCTCTGCTTTACCAAATAATCAGAAGGTTATTAAAATCCGTTTCGATCGGGATATGTTGAAGCCGAGCG
GTTTTATTACTACTACGCCTGCCCGGATTGCTTTGGATTTCCCAAATACGGGTGCCAATCTTAACCAACCAGTACTGCAA
TATAACGACGCTCTGCTTAACCAAATTGCTGTCGCTCAAGATAGCAATAAAACCCGTGTTCTACTTAACTTGAATAGACC
GGGGCAATACAATGCTGAAGTCAGAGGCAATGAGGTTTGGATTTATCTGAATGAATCTGGCCAAGGGGTTTCTACAACTG
TAAGAGCTGCTCCTCCCAGCAACCAAATTCAACAAGAATCTCTTGGTATAACGGAAACTCGTCCTGCTGCTGGTCAGAAT
GCTCTTGGTAGCAATACTGCCAACGTAGCCGTTGATTTTCACAAAGGTGCAAGTAATTCTGGCGTGATTGAAATTAATAC
TGCCGGTTATCGTGGTACTCCTGAAATCAAACAGCGTTCCAATAACTTGGTTATTTTGCTGAAAAATAACCAATTGCCGA
TTGCTGCACAACGTAATTTGGATGTAACCGATTTCAGTACTCCGGTTCGTACTATCAGTCTACGCCGTTTAGGTAATGAT
ACAGAGATTACCATTAAGAACCAGGGTGGTTGGGAACATAAAACCAGTCAGTCTGCTGGTCGATATACTATTACCGTTTC
TCCAAAATCTGTCGTAGCTGAAGATGGTCTGCGTAACCGTAATCATCACTTTACTGGTAAACGCGTTTCTTTAGATTTCC
AAGATGTAGATGTACGTACCATCCTGCAGATTTTGGCTAAAGAGTCCAATATGAACATTGTAGCCAGCGATAGCGTTTCT
GGCAAAATGACCTTGTCGTTGAAGGATGTGCCTTGGGATCAGGCCTTGGATTTGGTAATGCAGTCACGCGGGTTAGAATC
GCGTCGTAACGGTAATATTATCCGTGTTGCTCCGGCTGAAGAGTTCCGTAAAATTGATGTTGAGACTCTGGAAAATGCTA
AGCGTATTGAAGAACTTGGTCCTCTAGTATCTCGTACGTTCCAGTTGAAATACAAAGATGTTAATGAATTCCGTAAAATA
CTGAATATTAATGAGAATGGCGGATCAAATACTGGTAATAATAACTCTTTGTTGAGCAATCGTGGTTCTGCTGTTATTGA
TCCGGCTACGAATACCTTGATTATTAAGGATAACCAAAATGTTATCAAGGAATTTGAGCGTTTAATTGAACAGTTGGATG
TCCCTGCCCGTCAAGTGATGATTGAGGCTCGTATTGTTGAAGCTACGGATGGTTTTTCCCGTGCTTTAGGTGTGAAGTTT
GGTTATAACAAAACATCAGGCTCAACTCAGATTGGTAGCGGGTTAGGCACTAATAATGGTGGTACCGGAACAGCTTTTTC
TATTGCCCCTAACGTGAACTTGCCGGCTGCAGCCGCAACCTCTTCCATTACCATTGTCCGTGCGTTGTCCTCTGGTGCGT
TGGGGTTGGAATTGACTGCTATGCAGGAACAAAACCGCGGTAAGATTATTTCCAGCCCGCGCGTGCTGACTCAAGACCGG
AAAGAGGCGACCATCAAAGCTGGTCGGGAAATTCCCTATCAGGAAGCTTCTTCCAGTGGAGCTACCAGCACCAGCTTCAA
AGAAGCCGTATTGGGCTTGACTGTTACTCCCCAAATCACACCTGACGGTAATGTGATTATGGATATCAAACTGAATAAAG
ACTCTGTGGATCAGGGGTGTAGTGTGCTAGGAACACCGTGTATCAGTACCAAGGAACTTAACACTCGTGCGATGGTGGAA
GATGGTGGTACCATCATCTTGGGCGGTATCTATGAGGAAGACAATTCTAACTCCCAATACAAAGTACCGCTGCTGGGTGA
TATTCCTGTAGTTGGTAACTTGTTCCGTGGCACCAAACGCAATAACAGCAAAAATGAATTGCTGATCTTCATCACCCCGC
GCATCATGGGTACTGAAGGTAACGTTCTGCGCTACTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-114)

Bacterial type II and III secretion system protein (Secretin)

(540-696)

Bacterial type II/III secretion system short domain (Secretin_N)

(385-458)

Secretin and TonB N terminus short domain (STN)

(312-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

50.67

100

0.536
  pilQ Neisseria gonorrhoeae strain FA1090

53.015

100

0.536
  pilQ Neisseria meningitidis MC58

55.699

77.163

0.43
  pilQ Pseudomonas aeruginosa PAK

37.063

100

0.376

Multiple sequence alignment