Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EJ065_RS05035 Genome accession   NZ_CP034669
Coordinates   1197528..1198034 (+) Length   168 a.a.
NCBI ID   WP_128794917.1    Uniprot ID   A0A410RL38
Organism   Corallococcus coralloides strain B035     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1192528..1203034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ065_RS05025 (EJ065_0998) - 1193263..1194879 (-) 1617 WP_128794915.1 ABC transporter substrate-binding protein -
  EJ065_RS05030 (EJ065_0999) dacB 1194988..1197264 (+) 2277 WP_240672732.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  EJ065_RS05035 (EJ065_1000) ssb 1197528..1198034 (+) 507 WP_128794917.1 single-stranded DNA-binding protein Machinery gene
  EJ065_RS05040 (EJ065_1001) - 1198165..1198848 (-) 684 WP_128794918.1 succinate dehydrogenase -
  EJ065_RS05045 (EJ065_1002) - 1199122..1200015 (+) 894 WP_128794919.1 Hsp33 family molecular chaperone HslO -
  EJ065_RS05050 (EJ065_1003) - 1200151..1200846 (+) 696 WP_128794920.1 phosphoribosyltransferase family protein -
  EJ065_RS05055 (EJ065_1004) selB 1200875..1202803 (+) 1929 WP_128794921.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17998.81 Da        Isoelectric Point: 5.3106

>NTDB_id=332308 EJ065_RS05035 WP_128794917.1 1197528..1198034(+) (ssb) [Corallococcus coralloides strain B035]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCFVEG
RLQTREWMDKENKKNYTTEVVATSVTFLGGRDAGEGYSGGSGGGRRQQQGGNGGYGQGRDDYGQPPPPMDDGGGMGGNPG
GADDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=332308 EJ065_RS05035 WP_128794917.1 1197528..1198034(+) (ssb) [Corallococcus coralloides strain B035]
ATGGCTGGAGGCGTGAACAAGGTCATTCTCATCGGCAACCTCGGGGCGGACCCCGAAGTGCGCTTCACCCCGGGCGGTCA
GGCCGTGGCGAACTTCCGCATCGCGACGAGCGAGAGCTGGAACGACAAGAACGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTGTGCGGCGAGTACCTCAAGAAGGGACGGCAGTGCTTCGTCGAAGGC
CGTCTGCAGACGCGCGAGTGGATGGATAAGGAGAACAAGAAGAACTACACCACCGAGGTCGTCGCCACCTCCGTCACCTT
CCTCGGCGGCCGTGACGCCGGTGAGGGCTACAGCGGCGGCAGTGGCGGTGGGCGCCGGCAGCAGCAGGGCGGCAACGGCG
GCTACGGGCAGGGGCGTGACGACTACGGCCAGCCGCCGCCTCCCATGGATGACGGTGGCGGCATGGGCGGCAACCCCGGC
GGCGCGGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410RL38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.283

100

0.518
  ssb Neisseria gonorrhoeae MS11

42.935

100

0.47
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.458
  ssb Neisseria meningitidis MC58

41.848

100

0.458

Multiple sequence alignment