Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FVE20_RS01555 Genome accession   NZ_CP042846
Coordinates   338310..338846 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain JME64     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 333310..343846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE20_RS01535 aphA 333599..334312 (+) 714 WP_001226928.1 acid phosphatase AphA -
  FVE20_RS01540 yjbQ 334423..334839 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FVE20_RS01545 yjbR 334843..335199 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FVE20_RS01550 uvrA 335234..338056 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  FVE20_RS01555 ssb 338310..338846 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FVE20_RS01560 yjcB 338945..339226 (-) 282 WP_001295689.1 YjcB family protein -
  FVE20_RS01565 pdeC 339656..341242 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  FVE20_RS01570 soxS 341245..341568 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  FVE20_RS01575 soxR 341654..342118 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=332215 FVE20_RS01555 WP_000168305.1 338310..338846(+) (ssb) [Escherichia coli strain JME64]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=332215 FVE20_RS01555 WP_000168305.1 338310..338846(+) (ssb) [Escherichia coli strain JME64]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489