Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EKO29_RS18830 Genome accession   NZ_CP034660
Coordinates   4390001..4390684 (-) Length   227 a.a.
NCBI ID   WP_277601577.1    Uniprot ID   -
Organism   Colwellia sp. Arc7-635     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4385001..4395684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKO29_RS18795 (EKO29_18795) - 4385835..4386026 (+) 192 WP_126670303.1 hypothetical protein -
  EKO29_RS18800 (EKO29_18800) - 4386309..4387205 (+) 897 WP_126670304.1 TIGR01777 family oxidoreductase -
  EKO29_RS18805 (EKO29_18805) - 4387239..4387643 (+) 405 WP_126670305.1 hypothetical protein -
  EKO29_RS18810 (EKO29_18810) - 4387670..4388038 (-) 369 WP_126670306.1 hypothetical protein -
  EKO29_RS18815 (EKO29_18815) - 4388089..4388343 (-) 255 WP_126670307.1 cytochrome C oxidase subunit IV family protein -
  EKO29_RS18820 (EKO29_18820) - 4388352..4389005 (-) 654 WP_241238796.1 cytochrome c oxidase subunit 3 family protein -
  EKO29_RS18825 (EKO29_18825) - 4389248..4389685 (+) 438 WP_126670308.1 universal stress protein -
  EKO29_RS18830 (EKO29_18830) ssb 4390001..4390684 (-) 684 WP_277601577.1 single-stranded DNA-binding protein Machinery gene
  EKO29_RS18835 (EKO29_18835) - 4390862..4391260 (-) 399 WP_126670310.1 thioesterase family protein -
  EKO29_RS18840 (EKO29_18840) - 4391379..4392080 (+) 702 WP_126670311.1 2OG-Fe(II) oxygenase -
  EKO29_RS18845 (EKO29_18845) - 4392299..4394239 (-) 1941 WP_126670312.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24505.90 Da        Isoelectric Point: 5.9150

>NTDB_id=332211 EKO29_RS18830 WP_277601577.1 4390001..4390684(-) (ssb) [Colwellia sp. Arc7-635]
MAGVNKVIILGNLGKDPEVRFMPNGGGVANLTIATSESWKDKQTGEQKEKTEWHRVVMFGKLAEIAGEYLKKGSKVYIEG
ALQTRKWQNQQGQDQYTTEIVVQGFNGTMQMLDSRGGSGASAGGFNQQAPQQSGGFQQQQAPAPQQGGGFQQQAAPQQAY
NKPAQQSGGFQQQSAPQQAPQQSGGFQQQSAPQQSGGFQQQQGGFQQNAPKVNPQEPTIDFDDDIPF

Nucleotide


Download         Length: 684 bp        

>NTDB_id=332211 EKO29_RS18830 WP_277601577.1 4390001..4390684(-) (ssb) [Colwellia sp. Arc7-635]
ATGGCTGGTGTCAATAAAGTAATAATTTTAGGTAACTTAGGGAAAGACCCTGAAGTACGTTTTATGCCTAACGGTGGTGG
TGTTGCTAACCTCACTATTGCAACTTCTGAAAGTTGGAAAGACAAGCAAACGGGTGAACAAAAAGAAAAAACTGAATGGC
ACCGTGTAGTCATGTTTGGAAAGTTAGCCGAAATTGCTGGTGAATATTTAAAGAAAGGCTCTAAAGTTTATATTGAAGGT
GCTTTGCAAACACGTAAATGGCAAAACCAACAAGGCCAAGATCAGTATACAACTGAAATTGTTGTTCAAGGCTTTAACGG
CACTATGCAAATGTTAGATTCACGTGGCGGTAGCGGTGCTTCTGCAGGTGGCTTTAATCAGCAAGCACCACAACAAAGCG
GTGGTTTCCAACAACAGCAAGCACCAGCACCTCAACAAGGTGGTGGTTTCCAACAGCAAGCGGCGCCACAGCAAGCTTAT
AATAAGCCAGCTCAACAAAGCGGTGGTTTCCAACAGCAGTCAGCTCCACAGCAAGCTCCGCAGCAATCGGGTGGCTTCCA
ACAGCAGTCTGCACCACAACAATCTGGTGGCTTTCAGCAACAACAAGGTGGTTTTCAACAAAACGCACCTAAAGTGAACC
CACAAGAGCCAACTATTGATTTTGATGACGATATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.867

99.559

0.546
  ssb Glaesserella parasuis strain SC1401

47.577

100

0.476
  ssb Neisseria meningitidis MC58

40.265

99.559

0.401
  ssb Neisseria gonorrhoeae MS11

40.265

99.559

0.401

Multiple sequence alignment