Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KWO_RS16570 Genome accession   NZ_CP034655
Coordinates   3573470..3574924 (+) Length   484 a.a.
NCBI ID   WP_026113341.1    Uniprot ID   -
Organism   Xanthomonas vasicola pv. musacearum NCPPB 4379     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3568470..3579924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWO_RS16545 (KWO_016545) - 3568471..3568773 (-) 303 WP_010375228.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KWO_RS16550 (KWO_016550) - 3568777..3569187 (-) 411 WP_010375226.1 DNA-binding protein -
  KWO_RS16555 (KWO_016555) sucD 3569290..3570165 (-) 876 WP_010366205.1 succinate--CoA ligase subunit alpha -
  KWO_RS16560 (KWO_016560) sucC 3570190..3571359 (-) 1170 WP_010366204.1 ADP-forming succinate--CoA ligase subunit beta -
  KWO_RS16565 (KWO_016565) - 3571592..3573205 (+) 1614 WP_010375222.1 HAMP domain-containing sensor histidine kinase -
  KWO_RS16570 (KWO_016570) pilR 3573470..3574924 (+) 1455 WP_026113341.1 sigma-54 dependent transcriptional regulator Regulator
  KWO_RS16575 (KWO_016575) pilB 3575395..3577128 (-) 1734 WP_010375213.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KWO_RS16580 (KWO_016580) - 3577193..3577625 (-) 433 Protein_3051 pilin -
  KWO_RS16585 (KWO_016585) pilA/pilAI 3577701..3578117 (-) 417 WP_010375211.1 pilin Machinery gene
  KWO_RS16590 (KWO_016590) pilC 3578481..3579737 (+) 1257 WP_026113135.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52516.27 Da        Isoelectric Point: 6.9344

>NTDB_id=332150 KWO_RS16570 WP_026113341.1 3573470..3574924(+) (pilR) [Xanthomonas vasicola pv. musacearum NCPPB 4379]
MGRDPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTDIARRYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGAASESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLTATPGSAAVEPREAVLDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=332150 KWO_RS16570 WP_026113341.1 3573470..3574924(+) (pilR) [Xanthomonas vasicola pv. musacearum NCPPB 4379]
TTGGGCCGCGACCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCTTGGGCCGCATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCCGAT
GGCAATGGCATCGAACTGGTCACCGACATCGCCAGGCGGTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGTGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCCCCACCGCCGCCGCCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACGATCGGCAAGGTCGCGCGCAGCCAGGCACCGGTTTACAT
CGTCGGCGAATCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TCCCGGTCAACTGCGGCGCCATTCCTGCCGAGCTGATGGAGAGCGAATTTTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCACACGGCGGCACGTTGTTTCTGGACGAAGTAGCAGAATTACCGCT
GCAGATGCAGGTCAAGCTACTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCCGCCAGTGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACACACAAGGACCTGGGCGACTTGGTCTCCGACGGTCGCTTTCGGCATGACTTGTACTAC
CGCATCAACGTGATCGAACTACGCGTACCGCCGCTGCGCGAACGCGGCGGCGACCTGCCGCAACTGGCCGCCGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCGATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCGCTGGCCGAGGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCTGCCCACGGCGGGCACCGCCTCACCGCCACACCCGGCAGCGCTGCCGTCGAACCGCGCGAAGCTGT
CCTCGACATCGACCCCGCCTCGGCCGCCCTCCCCTCTTACATCGAGCAACTGGAACGCGCCGCAATCCAGAAAGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACCTTTCGGGCGCTGCGTTACAAGTTGAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

95.661

0.607
  pilR Acinetobacter baumannii strain A118

48.707

95.868

0.467

Multiple sequence alignment