Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HIBPF_RS06450 Genome accession   NC_014920
Coordinates   1274705..1275370 (+) Length   221 a.a.
NCBI ID   WP_013526173.1    Uniprot ID   Q4QLV5
Organism   Haemophilus influenzae F3031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1269705..1280370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIBPF_RS10490 - 1270234..1270401 (-) 168 WP_158305134.1 hypothetical protein -
  HIBPF_RS06420 (HIBPF_13440) rumB 1270446..1270880 (+) 435 Protein_1270 23S rRNA (uracil(747)-C(5))-methyltransferase -
  HIBPF_RS06425 (HIBPF13450) crp 1271245..1271919 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  HIBPF_RS06430 (HIBPF13460) - 1271904..1272155 (-) 252 WP_005647999.1 YheU family protein -
  HIBPF_RS06435 (HIBPF13470) slmA 1272177..1272833 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  HIBPF_RS06440 (HIBPF13480) dut 1272837..1273292 (-) 456 WP_005631431.1 dUTP diphosphatase -
  HIBPF_RS06445 (HIBPF13490) coaBC 1273340..1274542 (-) 1203 WP_011272308.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  HIBPF_RS06450 (HIBPF13500) radC 1274705..1275370 (+) 666 WP_013526173.1 RadC family protein Machinery gene
  HIBPF_RS06455 (HIBPF13510) rpmB 1275584..1275820 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  HIBPF_RS06460 (HIBPF13520) rpmG 1275832..1276002 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  HIBPF_RS06465 (HIBPF13530) - 1276350..1277714 (+) 1365 WP_013526174.1 diaminobutyrate--2-oxoglutarate transaminase -
  HIBPF_RS06470 (HIBPF13560) ddc 1277905..1279440 (+) 1536 WP_013526175.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25057.34 Da        Isoelectric Point: 6.3797

>NTDB_id=33203 HIBPF_RS06450 WP_013526173.1 1274705..1275370(+) (radC) [Haemophilus influenzae F3031]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=33203 HIBPF_RS06450 WP_013526173.1 1274705..1275370(+) (radC) [Haemophilus influenzae F3031]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGATTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCTTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAACTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(102-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

97.738

100

0.977
  radC Streptococcus pneumoniae TIGR4

38.14

97.285

0.371
  radC Streptococcus pneumoniae R6

37.674

97.285

0.367
  radC Streptococcus pneumoniae D39

37.674

97.285

0.367

Multiple sequence alignment