Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   EHW89_RS09355 Genome accession   NZ_CP034543
Coordinates   1902820..1903587 (+) Length   255 a.a.
NCBI ID   WP_003032028.1    Uniprot ID   A0A2T0FRM2
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1897820..1908587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS09325 (EHW89_09325) comE 1898386..1899135 (-) 750 WP_126468011.1 competence system response regulator transcription factor ComE Regulator
  EHW89_RS09330 (EHW89_09330) comD/comD2 1899135..1900457 (-) 1323 WP_126468013.1 sensor histidine kinase Regulator
  EHW89_RS09335 (EHW89_09335) - 1900472..1900621 (-) 150 WP_106388355.1 bacteriocin -
  EHW89_RS09345 (EHW89_09345) rlmH 1900903..1901382 (-) 480 WP_126468015.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  EHW89_RS09350 (EHW89_09350) htrA 1901575..1902765 (+) 1191 WP_003032033.1 S1C family serine protease Regulator
  EHW89_RS09355 (EHW89_09355) spo0J 1902820..1903587 (+) 768 WP_003032028.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 255 a.a.        Molecular weight: 29589.02 Da        Isoelectric Point: 8.6965

>NTDB_id=331808 EHW89_RS09355 WP_003032028.1 1902820..1903587(+) (spo0J) [Streptococcus periodonticum strain KCOM 2412]
MEKYQYITLNDIQTNPYQPRKEFSEEKIAELASSIKEHGIIQPIIVRKSPIIGYELLAGERRFRAAKLAGLTNIPAIIKE
VTDDEMMKQAIIENLQREDLNPIEEAQSYQYLIDKGLTHKEIALTMGKSRPYITNSVRLLNLPLNIIEAIKEGNISQGHA
RLLINLSEKEQNQWFDKILSQSLSVRQLEKQLHSQQTKTVTKNKHHLFLKEEEKRLKKIFGTEISLQFSEQSQSGKICIH
FSNLEEYQRIIDSFK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=331808 EHW89_RS09355 WP_003032028.1 1902820..1903587(+) (spo0J) [Streptococcus periodonticum strain KCOM 2412]
ATGGAAAAATATCAATATATCACACTTAATGACATCCAAACAAATCCTTATCAACCAAGAAAAGAATTTTCAGAAGAAAA
AATTGCTGAACTTGCTAGTTCTATAAAAGAACATGGGATTATTCAGCCCATCATTGTACGAAAATCTCCGATAATTGGTT
ATGAATTGCTAGCTGGTGAAAGGCGTTTTAGAGCTGCTAAATTAGCAGGCTTAACAAATATACCAGCTATTATAAAAGAA
GTAACAGATGATGAAATGATGAAGCAAGCCATCATTGAAAATTTACAACGAGAAGATTTAAATCCTATAGAAGAAGCACA
ATCTTATCAATATTTGATTGACAAAGGGTTGACACATAAAGAAATCGCTCTAACTATGGGAAAATCACGTCCTTATATTA
CAAATTCCGTCCGGTTATTAAATTTACCTCTCAATATTATCGAAGCGATAAAAGAAGGAAATATTTCTCAGGGACACGCT
CGTCTGCTCATTAATCTCTCAGAAAAAGAGCAAAATCAGTGGTTTGATAAAATCTTATCTCAAAGCCTTTCAGTTCGACA
GTTAGAAAAACAATTGCATTCCCAACAGACAAAAACTGTAACAAAAAATAAACATCATCTCTTCCTCAAAGAGGAAGAAA
AAAGATTAAAAAAGATATTTGGTACAGAGATTTCTCTTCAATTTTCTGAACAATCTCAATCAGGGAAAATTTGTATTCAT
TTTTCAAACCTAGAAGAATATCAAAGAATTATTGACAGCTTTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2T0FRM2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.118

100

0.541


Multiple sequence alignment