Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   EHW89_RS02115 Genome accession   NZ_CP034543
Coordinates   422640..423299 (-) Length   219 a.a.
NCBI ID   WP_126466541.1    Uniprot ID   -
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417640..428299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS02095 (EHW89_02095) - 418701..419264 (+) 564 WP_126466538.1 YutD family protein -
  EHW89_RS02100 (EHW89_02100) rlmN 419305..420387 (+) 1083 WP_024052079.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  EHW89_RS02105 (EHW89_02105) - 420380..420910 (+) 531 WP_126466539.1 VanZ family protein -
  EHW89_RS02110 (EHW89_02110) trpB 421271..422479 (+) 1209 WP_126466540.1 tryptophan synthase subunit beta -
  EHW89_RS02115 (EHW89_02115) cclA/cilC 422640..423299 (-) 660 WP_126466541.1 A24 family peptidase Machinery gene
  EHW89_RS02120 (EHW89_02120) - 423453..423980 (+) 528 WP_003032411.1 Dps family protein -
  EHW89_RS02125 (EHW89_02125) - 424254..424478 (+) 225 WP_003025724.1 YqgQ family protein -
  EHW89_RS02130 (EHW89_02130) - 424472..424852 (+) 381 WP_018543647.1 rhodanese-like domain-containing protein -
  EHW89_RS02135 (EHW89_02135) - 424873..425598 (-) 726 WP_003032391.1 pseudouridine synthase -
  EHW89_RS02140 (EHW89_02140) typA 425776..427617 (+) 1842 WP_126466542.1 translational GTPase TypA -
  EHW89_RS02145 (EHW89_02145) - 427682..427966 (+) 285 WP_126466543.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24871.36 Da        Isoelectric Point: 8.2983

>NTDB_id=331769 EHW89_RS02115 WP_126466541.1 422640..423299(-) (cclA/cilC) [Streptococcus periodonticum strain KCOM 2412]
MIHFYFFLVGSIVASFLGLVVDRFPEQSIIVPSSHCNACGQKLAPRDLVPVLSQLINRLRCRFCQSKIPIRYLILELVGS
LLFLATSLSYLTISQLVLLIMGITLALYDQREQEYPILIWLFFHLLLLFLVGFNLLMTIFLALGILAHFVDLRIGAGDFL
FLASCSTIFKLTEILWLIQIASLVGLCLFCLKKRKDRIAFVPCLLIGVIVLLMYELLLQ

Nucleotide


Download         Length: 660 bp        

>NTDB_id=331769 EHW89_RS02115 WP_126466541.1 422640..423299(-) (cclA/cilC) [Streptococcus periodonticum strain KCOM 2412]
ATGATTCATTTTTATTTTTTCTTGGTTGGAAGCATTGTGGCTTCTTTTTTAGGGCTGGTTGTTGATCGCTTTCCTGAACA
GTCCATTATCGTTCCTTCCAGTCATTGTAATGCTTGTGGGCAGAAATTAGCACCTCGTGATTTAGTCCCTGTCCTTTCAC
AGCTTATCAATCGACTGCGCTGTCGGTTTTGTCAGTCAAAAATTCCCATTCGCTACTTGATATTAGAGTTGGTAGGTAGT
TTACTCTTTCTCGCAACTTCCTTAAGCTACTTAACTATCAGCCAACTTGTCTTGCTCATAATGGGAATTACACTAGCTCT
TTATGATCAAAGAGAACAGGAATATCCTATCCTCATTTGGTTGTTCTTTCATCTTCTTCTCCTATTTTTGGTAGGTTTTA
ATCTTCTAATGACTATTTTTTTAGCTCTTGGAATTTTGGCTCATTTCGTTGATTTGCGTATCGGTGCAGGAGATTTTCTT
TTTCTAGCTTCTTGTTCAACTATTTTCAAGTTGACAGAGATTCTTTGGCTGATTCAAATTGCCAGCTTAGTAGGCTTATG
TCTCTTTTGCTTAAAAAAGAGAAAAGACAGGATAGCTTTCGTTCCCTGTCTTTTGATTGGAGTGATTGTTCTACTTATGT
ATGAGTTGTTACTTCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

56.881

99.543

0.566
  cclA/cilC Streptococcus mitis NCTC 12261

56.422

99.543

0.562
  cclA/cilC Streptococcus pneumoniae Rx1

56.422

99.543

0.562
  cclA/cilC Streptococcus pneumoniae D39

56.422

99.543

0.562
  cclA/cilC Streptococcus pneumoniae R6

56.422

99.543

0.562
  cclA/cilC Streptococcus pneumoniae TIGR4

55.505

99.543

0.553

Multiple sequence alignment