Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   FR761_RS15410 Genome accession   NZ_CP042556
Coordinates   3189707..3190381 (-) Length   224 a.a.
NCBI ID   WP_139843021.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain E47     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3184707..3195381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR761_RS15385 (FR761_15385) - 3185122..3186006 (+) 885 WP_057069835.1 LysR family transcriptional regulator -
  FR761_RS15395 (FR761_15395) - 3186309..3187496 (+) 1188 WP_086231430.1 ammonium transporter -
  FR761_RS15400 (FR761_15400) - 3187648..3188346 (+) 699 WP_031985170.1 phosphatase PAP2 family protein -
  FR761_RS15405 (FR761_15405) - 3188347..3189681 (-) 1335 WP_086231431.1 ATP-binding protein -
  FR761_RS15410 (FR761_15410) ciaR 3189707..3190381 (-) 675 WP_139843021.1 response regulator transcription factor Regulator
  FR761_RS15415 (FR761_15415) - 3190396..3192045 (-) 1650 WP_086231429.1 phosphoethanolamine transferase -
  FR761_RS15420 (FR761_15420) - 3192228..3193532 (-) 1305 WP_002059088.1 DcaP family trimeric outer membrane transporter -
  FR761_RS15425 (FR761_15425) - 3194078..3195325 (-) 1248 WP_002059085.1 MFS transporter -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25583.43 Da        Isoelectric Point: 5.3246

>NTDB_id=331698 FR761_RS15410 WP_139843021.1 3189707..3190381(-) (ciaR) [Acinetobacter baumannii strain E47]
MTKILMIEDDFMIAESTTTLLQYHQFEVEWINNGLDGLAQLAKNKFDLILLDLGLPMMDGMQVLKQIRQRAATPVLIISA
RDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGVEAQFASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREW
AILIPLMSHPNKIFSKANLEDKLYDFDSDVTSNTIEVYVHHLRAKLGKDFIRTIRGLGYRLGQS

Nucleotide


Download         Length: 675 bp        

>NTDB_id=331698 FR761_RS15410 WP_139843021.1 3189707..3190381(-) (ciaR) [Acinetobacter baumannii strain E47]
ATGACAAAAATCTTGATGATTGAAGATGATTTTATGATTGCAGAATCAACAACGACGTTGCTGCAATATCATCAATTTGA
GGTGGAATGGATCAATAACGGTTTAGATGGTTTGGCCCAATTAGCAAAGAATAAGTTTGATCTCATTCTTTTAGACTTGG
GATTGCCAATGATGGATGGTATGCAAGTTTTAAAGCAGATTCGTCAAAGAGCAGCAACACCAGTCTTAATTATCTCTGCA
CGTGACCAACTGCAAAACCGTGTTGATGGTTTGAATTTGGGAGCAGATGATTACTTAATTAAGCCTTATGAGTTTGATGA
ATTACTCGCTCGTATTCATGCCTTATTACGCCGTAGTGGCGTAGAGGCTCAATTTGCAAGCCAAGATCAACTACTAGAAA
GCGGTGATCTGGTTTTAAATGTTGAACAGCACATTGCAACATTTAAAGGGCAACGTATTGATTTATCGAATCGTGAATGG
GCAATCTTGATTCCGCTTATGAGTCATCCAAATAAAATTTTCTCAAAAGCTAATTTGGAAGATAAGTTATATGACTTTGA
TAGTGATGTGACCAGCAACACGATTGAGGTATATGTCCATCATTTAAGGGCTAAGTTGGGTAAAGACTTTATTCGAACTA
TCCGAGGACTGGGTTACCGTTTAGGGCAATCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.053

100

0.384
  ciaR Streptococcus pneumoniae D39

38.053

100

0.384
  ciaR Streptococcus pneumoniae R6

38.053

100

0.384
  ciaR Streptococcus pneumoniae TIGR4

38.053

100

0.384
  ciaR Streptococcus mutans UA159

37.445

100

0.379
  micA Streptococcus pneumoniae Cp1015

36.404

100

0.371

Multiple sequence alignment