Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   EJJ34_RS20405 Genome accession   NZ_CP034484
Coordinates   3842379..3842498 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3837379..3847498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJJ34_RS20380 (EJJ34_20380) albG 3837543..3838244 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  EJJ34_RS20385 (EJJ34_20385) ywhL 3838250..3839626 (-) 1377 WP_003244415.1 YncE family protein -
  EJJ34_RS20390 (EJJ34_20390) ywhK 3839665..3841020 (-) 1356 WP_003227552.1 YncE family protein -
  EJJ34_RS23150 (EJJ34_20395) - 3841017..3841247 (-) 231 WP_009968328.1 hypothetical protein -
  EJJ34_RS20400 (EJJ34_20400) rapF 3841250..3842395 (+) 1146 WP_003227549.1 response regulator aspartate phosphatase RapF Regulator
  EJJ34_RS20405 (EJJ34_20405) phrF 3842379..3842498 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  EJJ34_RS20410 (EJJ34_20410) ywhH 3842597..3843070 (+) 474 WP_003227547.1 YbaK/EbsC family protein -
  EJJ34_RS20415 (EJJ34_20415) speB 3843102..3843974 (-) 873 WP_003227545.1 agmatinase -
  EJJ34_RS20420 (EJJ34_20420) speE 3844035..3844865 (-) 831 WP_003227543.1 spermidine synthase -
  EJJ34_RS20425 (EJJ34_20425) pbpG 3845067..3847142 (+) 2076 WP_003227540.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=331698 EJJ34_RS20405 WP_009968329.1 3842379..3842498(+) (phrF) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=331698 EJJ34_RS20405 WP_009968329.1 3842379..3842498(+) (phrF) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment