Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EJJ34_RS13490 Genome accession   NZ_CP034484
Coordinates   2552899..2553195 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2547899..2558195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJJ34_RS13445 (EJJ34_13450) tasA 2548307..2549092 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  EJJ34_RS13450 (EJJ34_13455) sipW 2549156..2549728 (-) 573 WP_003246088.1 signal peptidase I SipW -
  EJJ34_RS13455 (EJJ34_13460) tapA 2549712..2550473 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  EJJ34_RS13460 (EJJ34_13465) yqzG 2550745..2551071 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  EJJ34_RS13465 (EJJ34_13470) spoIITA 2551113..2551292 (-) 180 WP_003230176.1 YqzE family protein -
  EJJ34_RS13470 (EJJ34_13475) comGG 2551363..2551737 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  EJJ34_RS13475 (EJJ34_13480) comGF 2551738..2552121 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  EJJ34_RS13480 (EJJ34_13485) comGE 2552147..2552494 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  EJJ34_RS13485 (EJJ34_13490) comGD 2552478..2552909 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  EJJ34_RS13490 (EJJ34_13495) comGC 2552899..2553195 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  EJJ34_RS13495 (EJJ34_13500) comGB 2553209..2554246 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  EJJ34_RS13500 (EJJ34_13505) comGA 2554233..2555303 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  EJJ34_RS13510 (EJJ34_13515) corA 2555715..2556668 (-) 954 WP_004399136.1 magnesium transporter CorA -
  EJJ34_RS13515 (EJJ34_13520) yqhB 2556811..2558139 (+) 1329 WP_009967730.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=331667 EJJ34_RS13490 WP_003230162.1 2552899..2553195(-) (comGC) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=331667 EJJ34_RS13490 WP_003230162.1 2552899..2553195(-) (comGC) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment