Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SPJ_RS08525 Genome accession   NC_012466
Coordinates   1640873..1641532 (+) Length   219 a.a.
NCBI ID   WP_000565022.1    Uniprot ID   -
Organism   Streptococcus pneumoniae JJA     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1635873..1646532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS08500 (SPJ_1711) - 1636178..1636495 (-) 318 WP_001151646.1 PTS sugar transporter subunit IIB -
  SPJ_RS08505 (SPJ_1712) - 1636510..1637406 (-) 897 WP_000825669.1 PEP phosphonomutase -
  SPJ_RS08510 (SPJ_1713) - 1637409..1638671 (-) 1263 WP_000413336.1 PTS sugar transporter subunit IIC -
  SPJ_RS08515 (SPJ_1714) - 1638951..1640129 (+) 1179 WP_000175880.1 ROK family transcriptional regulator -
  SPJ_RS08520 (SPJ_1715) - 1640357..1640803 (-) 447 WP_000155406.1 GNAT family N-acetyltransferase -
  SPJ_RS08525 (SPJ_1716) cclA/cilC 1640873..1641532 (+) 660 WP_000565022.1 A24 family peptidase Machinery gene
  SPJ_RS08530 (SPJ_1717) - 1641584..1642735 (-) 1152 WP_000481756.1 XRE family transcriptional regulator -
  SPJ_RS08535 (SPJ_1718) - 1642750..1643481 (-) 732 WP_000934017.1 hypothetical protein -
  SPJ_RS12155 - 1643710..1643811 (+) 102 Protein_1630 prepilin peptidase -
  SPJ_RS08540 (SPJ_1719) trpA 1643783..1644559 (-) 777 WP_001127010.1 tryptophan synthase subunit alpha -
  SPJ_RS08545 (SPJ_1720) trpB 1644552..1645775 (-) 1224 WP_000331284.1 tryptophan synthase subunit beta -
  SPJ_RS08550 (SPJ_1721) - 1645753..1646352 (-) 600 WP_000169894.1 phosphoribosylanthranilate isomerase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24877.09 Da        Isoelectric Point: 8.1595

>NTDB_id=33163 SPJ_RS08525 WP_000565022.1 1640873..1641532(+) (cclA/cilC) [Streptococcus pneumoniae JJA]
MIDFYFFLVGSILASFLGLVIDRFPEQSIISSASHCDSCQTRLRPLDLIPILSQVFNRFRCRYCKVRYPVWYALFELVLG
LLFLLYSWKLLSLGQVVLITAGLTLGIYDFHHQEYPLLVWMTCHLILIASSGWNLVMVSFLILGILAHFIDIRMGAGDFL
FLASCALVFSVTELLILIQFASATGILAFLLQKKKERLPFVPFLLLATCLIIFGKLLLV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=33163 SPJ_RS08525 WP_000565022.1 1640873..1641532(+) (cclA/cilC) [Streptococcus pneumoniae JJA]
ATGATTGATTTTTATTTTTTTCTCGTCGGGAGCATTCTCGCTTCCTTTCTTGGTTTGGTCATTGACCGTTTTCCAGAGCA
ATCCATTATCAGTTCAGCCAGTCACTGCGATTCCTGTCAGACTCGCTTGCGTCCCTTAGATTTGATTCCGATTCTCTCAC
AGGTCTTCAATCGCTTTCGCTGTCGCTACTGCAAAGTTCGCTATCCTGTCTGGTATGCCCTCTTTGAATTAGTCTTAGGA
CTCCTCTTTCTGCTTTACTCTTGGAAATTGCTTTCCTTGGGGCAAGTCGTCCTAATCACCGCTGGTTTGACCTTGGGTAT
CTACGACTTTCACCATCAGGAATATCCCTTACTGGTCTGGATGACTTGCCACCTAATCCTAATAGCTTCCTCTGGCTGGA
ATCTGGTCATGGTCTCCTTCCTCATACTTGGAATTTTGGCTCATTTTATCGATATCCGCATGGGTGCAGGGGATTTCCTT
TTTTTAGCTTCTTGTGCTCTCGTCTTTAGCGTAACGGAGTTACTGATCTTGATTCAGTTCGCTTCTGCGACGGGTATCCT
GGCCTTTCTCCTGCAAAAGAAAAAGGAAAGACTTCCTTTCGTGCCTTTCCTCTTACTTGCTACTTGTTTGATTATTTTTG
GTAAGCTACTGCTTGTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

97.26

100

0.973
  cclA/cilC Streptococcus pneumoniae Rx1

95.89

100

0.959
  cclA/cilC Streptococcus pneumoniae D39

95.89

100

0.959
  cclA/cilC Streptococcus pneumoniae R6

95.89

100

0.959
  cclA/cilC Streptococcus mitis SK321

91.781

100

0.918
  cclA/cilC Streptococcus mitis NCTC 12261

85.845

100

0.858

Multiple sequence alignment