Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   FGL73_RS05745 Genome accession   NZ_CP042408
Coordinates   1225910..1227280 (-) Length   456 a.a.
NCBI ID   WP_098393333.1    Uniprot ID   -
Organism   Lactococcus lactis strain CBA3619     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1220910..1232280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL73_RS05730 (FGL73_05730) - 1222083..1223516 (-) 1434 WP_146978186.1 6-phospho-beta-glucosidase -
  FGL73_RS05735 (FGL73_05735) yidD 1223637..1223903 (-) 267 WP_038601637.1 membrane protein insertion efficiency factor YidD -
  FGL73_RS05740 (FGL73_05740) - 1224020..1225762 (-) 1743 WP_038601639.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FGL73_RS05745 (FGL73_05745) ciaH 1225910..1227280 (-) 1371 WP_098393333.1 cell wall metabolism sensor histidine kinase WalK Regulator
  FGL73_RS05750 (FGL73_05750) ciaR 1227374..1228042 (-) 669 WP_021722129.1 response regulator transcription factor Regulator
  FGL73_RS05755 (FGL73_05755) - 1228220..1229194 (-) 975 WP_058205412.1 LacI family DNA-binding transcriptional regulator -
  FGL73_RS05760 (FGL73_05760) - 1229347..1231602 (-) 2256 WP_146978187.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 51358.89 Da        Isoelectric Point: 9.4589

>NTDB_id=331578 FGL73_RS05745 WP_098393333.1 1225910..1227280(-) (ciaH) [Lactococcus lactis strain CBA3619]
MKKIIKKVKSSAIVKNDGKNFLHFFLAFTVIFVALAVIIIQVMQLGMYRATDQNLHNLAQNRVFLIEAANNQLGMNNSQD
SGYYGPNNSVIFYDSEGKSFIPSAGSNANISTNFGMSLLQKTMKFNENQINTIQTVSVKNPYGDNWHYRYLTTSQFIITN
TDGTVTPVYAQIFSNVDQIQDAMSRAMWVIVTTMITFWLLSVIISLYLANWTLRPILAAYEKQKEFVENASHELRTPLAI
LQNRLELLFQKPTATIIDESENISESLSEVRNMRLLTSNLLNLARRDSGIRIEPEATTTTYFENIFNSYEMLAENAGKKF
SGHLKLDGTVNLDQALIKQLLTILFDNALKYTGDEGEISVDVQKNGGFLVFAVADNGEGISDEDKKKIFDRFFRVDKART
RQKGGLGLGLSLAKQIVEAYNGKITVEDNKPKGTKFIIRIRVDSTISNPAKIFQKL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=331578 FGL73_RS05745 WP_098393333.1 1225910..1227280(-) (ciaH) [Lactococcus lactis strain CBA3619]
TTGAAGAAAATAATTAAAAAAGTTAAATCTTCAGCTATTGTAAAAAATGATGGGAAAAATTTCCTTCATTTTTTTCTAGC
TTTTACAGTCATTTTTGTTGCTTTAGCCGTGATTATTATTCAAGTCATGCAATTAGGAATGTATCGAGCGACTGACCAAA
ATTTACACAATTTGGCTCAAAACCGAGTCTTTTTGATAGAAGCGGCGAATAATCAATTAGGAATGAATAATTCGCAAGAT
AGTGGCTATTACGGCCCCAATAATAGTGTAATTTTTTATGATTCAGAGGGTAAAAGTTTCATACCTTCAGCAGGCTCAAA
TGCAAATATAAGTACAAACTTTGGCATGAGCCTTCTGCAAAAAACAATGAAATTTAACGAAAATCAAATTAACACTATTC
AAACTGTTTCTGTAAAAAATCCTTATGGAGATAATTGGCACTATCGTTATCTGACAACATCACAATTTATTATTACAAAT
ACTGATGGAACAGTAACACCGGTTTATGCACAAATTTTTTCAAATGTTGACCAAATTCAAGATGCCATGAGCCGAGCCAT
GTGGGTCATTGTGACAACAATGATTACTTTCTGGCTTCTGTCAGTAATTATTAGTTTGTATCTTGCAAATTGGACATTGA
GACCTATCCTGGCTGCTTATGAAAAGCAAAAAGAATTTGTTGAAAATGCTTCACATGAATTGAGAACACCTCTGGCAATT
TTGCAAAATCGTCTAGAATTACTTTTCCAAAAGCCAACAGCAACAATTATTGATGAATCAGAAAATATTTCTGAAAGTTT
ATCAGAAGTTCGTAATATGCGTTTATTAACAAGTAACTTACTGAACTTAGCTCGTCGAGATTCTGGAATCAGAATTGAAC
CAGAGGCGACTACGACAACTTATTTTGAGAATATTTTTAATAGCTATGAAATGCTTGCTGAAAACGCAGGTAAAAAGTTC
TCAGGCCATTTGAAATTAGATGGAACGGTTAATTTGGACCAAGCCCTGATTAAACAATTGCTAACTATCTTATTTGATAA
TGCCCTTAAATACACGGGTGATGAGGGTGAAATCTCTGTAGATGTTCAAAAAAATGGGGGATTTTTAGTTTTTGCTGTCG
CCGATAATGGTGAAGGAATTTCTGATGAAGATAAGAAAAAAATCTTTGACCGCTTTTTCCGAGTAGATAAAGCAAGAACG
CGTCAAAAAGGTGGCTTAGGTTTGGGTCTTTCTCTGGCCAAACAAATTGTTGAAGCTTATAATGGGAAGATTACAGTTGA
AGATAATAAACCTAAAGGTACAAAATTCATTATTAGAATTCGTGTGGATAGCACAATTTCAAATCCTGCAAAAATTTTCC
AAAAGTTGTAA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(223-289)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(333-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

48.372

94.298

0.456
  ciaH Streptococcus pneumoniae Rx1

44.321

98.465

0.436
  ciaH Streptococcus pneumoniae D39

44.321

98.465

0.436
  ciaH Streptococcus pneumoniae R6

44.321

98.465

0.436
  ciaH Streptococcus pneumoniae TIGR4

44.321

98.465

0.436