Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FGL89_RS08735 Genome accession   NZ_CP042374
Coordinates   754524..754934 (-) Length   136 a.a.
NCBI ID   WP_223822752.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain CBA3620     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 749524..759934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL89_RS03625 (FGL89_03625) rplK 749777..750241 (-) 465 WP_014973755.1 50S ribosomal protein L11 -
  FGL89_RS03630 (FGL89_03630) nusG 750354..750983 (-) 630 WP_147000431.1 transcription termination/antitermination protein NusG -
  FGL89_RS03635 (FGL89_03635) secE 751101..751274 (-) 174 WP_014973753.1 preprotein translocase subunit SecE -
  FGL89_RS03640 (FGL89_03640) rpmG 751286..751435 (-) 150 WP_014973752.1 50S ribosomal protein L33 -
  FGL89_RS03645 (FGL89_03645) - 751488..752078 (-) 591 WP_014973751.1 TetR/AcrR family transcriptional regulator -
  FGL89_RS03650 (FGL89_03650) - 752160..753710 (-) 1551 WP_014973750.1 ABC transporter permease -
  FGL89_RS03655 (FGL89_03655) hpf 753899..754441 (-) 543 WP_014973749.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FGL89_RS08735 comFC/cflB 754524..754934 (-) 411 WP_223822752.1 ComF family protein Machinery gene
  FGL89_RS03665 (FGL89_03665) comFA 755192..756469 (-) 1278 WP_135198017.1 DEAD/DEAH box helicase Machinery gene
  FGL89_RS03670 (FGL89_03670) - 756739..757374 (+) 636 WP_014973746.1 YigZ family protein -
  FGL89_RS03675 (FGL89_03675) - 757415..758386 (-) 972 WP_014973745.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15631.12 Da        Isoelectric Point: 10.3314

>NTDB_id=331552 FGL89_RS08735 WP_223822752.1 754524..754934(-) (comFC/cflB) [Leuconostoc carnosum strain CBA3620]
MQRYKFNGDYSLRQIFNHELIQYVNNMAIDLVVVIPISEYTMMTRGFNQTVGLFEGVTLSDLLKVKAKNKSHQSQFNRKG
RMMRTQPFTVSKSLPLHNKRVLLVDDVYTTGNTLYHAADLLYDLGAKNVKSLSLAR

Nucleotide


Download         Length: 411 bp        

>NTDB_id=331552 FGL89_RS08735 WP_223822752.1 754524..754934(-) (comFC/cflB) [Leuconostoc carnosum strain CBA3620]
ATGCAACGATACAAATTTAATGGTGATTACAGTTTGCGTCAGATATTTAATCATGAATTAATCCAGTACGTGAATAATAT
GGCTATAGATCTAGTTGTAGTTATTCCCATTAGTGAGTACACCATGATGACACGAGGATTTAATCAGACAGTTGGTCTAT
TTGAAGGTGTGACGTTGAGTGACTTACTAAAAGTCAAAGCTAAAAATAAAAGTCACCAGTCACAATTTAATAGGAAAGGT
CGCATGATGCGGACACAACCATTTACAGTGAGCAAATCATTACCACTACACAACAAAAGAGTGTTGCTTGTAGATGATGT
CTATACAACAGGGAACACATTGTATCATGCAGCAGACTTATTGTACGATTTAGGTGCGAAAAATGTGAAAAGTCTATCGT
TAGCACGTTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(57-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

38.235

100

0.382
  comFC/cflB Streptococcus pneumoniae TIGR4

37.313

98.529

0.368
  comFC/cflB Streptococcus pneumoniae Rx1

37.313

98.529

0.368
  comFC/cflB Streptococcus pneumoniae D39

37.313

98.529

0.368
  comFC/cflB Streptococcus pneumoniae R6

37.313

98.529

0.368
  comFC Latilactobacillus sakei subsp. sakei 23K

35.252

100

0.36

Multiple sequence alignment