Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EJN90_RS10600 Genome accession   NZ_CP034465
Coordinates   2279320..2281131 (+) Length   603 a.a.
NCBI ID   WP_126111055.1    Uniprot ID   A0A3S9HCF0
Organism   Jeotgalibaca ciconiae strain H21T32     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2274320..2286131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN90_RS10575 (EJN90_10575) - 2274879..2275277 (+) 399 WP_126111045.1 CidA/LrgA family protein -
  EJN90_RS10580 (EJN90_10580) - 2275270..2275977 (+) 708 WP_126111047.1 LrgB family protein -
  EJN90_RS10585 (EJN90_10585) - 2276007..2277128 (+) 1122 WP_126111049.1 lactate oxidase -
  EJN90_RS10590 (EJN90_10590) - 2277345..2277989 (+) 645 WP_126111051.1 adaptor protein MecA -
  EJN90_RS10595 (EJN90_10595) - 2278091..2279194 (+) 1104 WP_126111053.1 competence protein CoiA -
  EJN90_RS10600 (EJN90_10600) pepF 2279320..2281131 (+) 1812 WP_126111055.1 oligoendopeptidase F Regulator
  EJN90_RS10605 (EJN90_10605) - 2281172..2281867 (-) 696 WP_126111057.1 DsbA family protein -
  EJN90_RS10610 (EJN90_10610) - 2282223..2282804 (-) 582 WP_126111059.1 CYTH domain-containing protein -
  EJN90_RS10615 (EJN90_10615) - 2282996..2283637 (+) 642 WP_126111061.1 GTP pyrophosphokinase family protein -
  EJN90_RS10620 (EJN90_10620) - 2283649..2284470 (+) 822 WP_126111063.1 NAD kinase -
  EJN90_RS10625 (EJN90_10625) - 2284493..2285449 (+) 957 WP_164544067.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69106.07 Da        Isoelectric Point: 4.5831

>NTDB_id=331518 EJN90_RS10600 WP_126111055.1 2279320..2281131(+) (pepF) [Jeotgalibaca ciconiae strain H21T32]
MSDVKQLPKRNEVSEETTWDLSTIFESDEAFEKELEVISALGKEVKELQGTIGESSDALLKGIEKILATNQKLERAYVYS
HLKNDQDTANSTYQTLHDKAVAVLTQVNEAGSWFNPEVLAIPEETLTQYLEENDELKKYTHLLEELTSQRDHVLSAREEE
LLAGAAEIFSGASRTFSVLNNADIEFPTVKDEDGNEVKLSHGLYGKLMESSNREVREAAYKALYKTYSGLKNTFATTLST
HVKSHNYQAKVRNFSSARAASLANNNIPESVYDTLLEVVNKNLPLLHRYVALRKKLLNVDKLYMYDMYTPLTGDAPIKYT
IEEAKEKTLDSLQPLGEDYQRILNEAFDNRWIDWYENEGKRSGAYSSGAYDTNPYILMNWQDSLNQLYTLVHELGHSVHS
YYTRGNQPYAYGDYSIFLAEIASTTNENILTDYLLKTQTDPKVRIYVLNHYLDGFKGTVFRQTQFAEFEHYIHQKAQEGI
PLTQEFMTDYYGKLNANYYGPEVEEDPEIALEWSRIPHFYYNYYVYQYATGFSAATALAQRILDGEEGSLEKYITYLKSG
SSDYPIEVMKKAGVDMTQASYLEDAMKVFEERLNELEKLISEL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=331518 EJN90_RS10600 WP_126111055.1 2279320..2281131(+) (pepF) [Jeotgalibaca ciconiae strain H21T32]
ATGTCAGATGTGAAACAATTACCAAAACGTAATGAAGTTTCTGAGGAAACAACGTGGGATTTAAGTACGATTTTTGAATC
TGATGAAGCTTTTGAGAAAGAATTAGAAGTTATCAGTGCGCTTGGAAAAGAAGTGAAAGAACTTCAAGGAACAATTGGCG
AGAGCAGTGATGCTTTGCTAAAGGGAATTGAAAAGATTTTAGCAACTAATCAAAAATTAGAACGTGCTTATGTTTATTCT
CATTTAAAAAATGATCAAGACACAGCGAATAGTACGTATCAAACATTGCATGATAAAGCTGTTGCAGTATTAACGCAAGT
GAATGAAGCCGGTTCATGGTTTAATCCTGAAGTATTGGCGATTCCAGAAGAAACTTTAACTCAATATTTAGAAGAAAATG
ATGAATTGAAGAAATATACTCACTTATTGGAAGAGCTTACTTCTCAACGTGATCATGTATTAAGCGCAAGAGAAGAAGAA
CTATTAGCAGGAGCAGCAGAGATTTTCTCTGGTGCAAGTCGTACATTCTCTGTTTTAAATAATGCGGACATTGAATTTCC
TACTGTAAAAGATGAAGACGGTAATGAAGTTAAGCTATCACATGGTCTTTATGGAAAGTTGATGGAAAGTTCGAACCGTG
AAGTTCGAGAAGCTGCTTATAAAGCTTTATACAAAACATATAGTGGATTAAAAAATACATTTGCGACTACATTGTCTACA
CATGTAAAGTCACATAATTACCAAGCAAAAGTACGTAATTTTAGTTCAGCACGTGCAGCGTCTTTAGCGAATAACAATAT
ACCAGAAAGCGTTTATGATACATTATTAGAAGTAGTGAATAAAAATCTACCATTGTTGCATCGCTATGTCGCTTTGCGTA
AAAAACTTCTAAATGTGGATAAATTATATATGTATGATATGTACACACCGCTTACTGGGGATGCGCCAATCAAGTATACG
ATTGAAGAAGCAAAAGAAAAAACATTGGATTCTTTACAACCATTAGGAGAAGATTACCAACGTATTTTAAATGAAGCATT
TGATAATCGCTGGATTGACTGGTATGAAAACGAAGGAAAACGCAGTGGTGCTTATTCTTCAGGAGCATATGATACAAATC
CGTACATCTTGATGAACTGGCAAGATTCATTGAACCAGCTGTACACATTGGTTCATGAGTTAGGACACAGTGTCCATAGT
TATTATACGCGTGGTAACCAACCATATGCTTATGGTGATTATTCTATTTTCTTAGCTGAAATTGCTTCTACAACGAATGA
AAATATTTTGACAGACTATTTATTAAAAACACAAACGGATCCAAAAGTCCGTATTTATGTATTAAATCATTACCTGGATG
GCTTTAAAGGAACTGTATTCCGTCAAACGCAGTTTGCTGAATTCGAACATTATATTCATCAAAAAGCTCAAGAGGGTATT
CCATTAACACAAGAGTTTATGACTGATTATTACGGGAAATTAAATGCAAATTACTATGGGCCAGAAGTTGAAGAGGATCC
AGAAATTGCTTTAGAGTGGTCACGCATCCCGCATTTCTATTACAATTACTATGTGTATCAATATGCTACAGGATTTTCTG
CAGCTACTGCATTAGCGCAAAGAATTCTAGATGGAGAAGAGGGCTCGTTAGAAAAATACATTACATATTTAAAATCTGGC
AGCAGTGATTATCCAATTGAAGTAATGAAAAAAGCAGGAGTGGACATGACACAAGCATCATACTTGGAAGATGCTATGAA
AGTGTTCGAAGAACGCTTAAATGAGTTAGAAAAATTAATTAGCGAGCTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9HCF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.484

98.01

0.534

Multiple sequence alignment