Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FGL89_RS06695 Genome accession   NZ_CP042374
Coordinates   1335223..1337229 (+) Length   668 a.a.
NCBI ID   WP_014974741.1    Uniprot ID   K0DDQ1
Organism   Leuconostoc carnosum strain CBA3620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1330223..1342229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL89_RS06675 (FGL89_06675) - 1330447..1331454 (+) 1008 WP_014974745.1 glycosyltransferase family 4 protein -
  FGL89_RS06680 (FGL89_06680) - 1331476..1332513 (+) 1038 WP_014974744.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  FGL89_RS06685 (FGL89_06685) - 1332506..1332772 (+) 267 WP_014974743.1 YkuJ family protein -
  FGL89_RS06690 (FGL89_06690) - 1332841..1335000 (+) 2160 WP_014974742.1 LTA synthase family protein -
  FGL89_RS06695 (FGL89_06695) uvrB 1335223..1337229 (+) 2007 WP_014974741.1 excinuclease ABC subunit UvrB Machinery gene
  FGL89_RS06700 (FGL89_06700) uvrA 1337353..1340217 (+) 2865 WP_014974740.1 excinuclease ABC subunit UvrA Machinery gene
  FGL89_RS08660 - 1340270..1340392 (-) 123 WP_014974739.1 putative metal homeostasis protein -
  FGL89_RS06705 (FGL89_06705) - 1340632..1341606 (+) 975 WP_014974738.1 gluconeogenesis factor YvcK family protein -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 76047.05 Da        Isoelectric Point: 4.6189

>NTDB_id=331541 FGL89_RS06695 WP_014974741.1 1335223..1337229(+) (uvrB) [Leuconostoc carnosum strain CBA3620]
MREHVADHGFEVVSKYQPTGDQPRAIDQLVRGINAGVKEQVLLGATGTGKTFTISNVIKDIKKPTLVLSHNKTLAGQLYG
ELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAVNDEIDQLRNSATSSLLSRNDVIVVASVSSIFGLGDPHQYQ
EHVINLRVGNEYGRNQLMMDLINVQFTRNDIDFHRGTFRVRGDVVEIFPASEDEMALRVEFFGDEIDRIREINSLTGETS
SERDYVAIYPAKHFMTDDDQMSTALAGITEEMNQQVALFEKEGKLIEAQRIKQRTEYDLAMLEEMGFVGGIENYSRWMDG
RQVDEPPFTLLDFFPDDFLVVVDESHVTMPQIRGMFNGDRARKETLVNYGFRLPSALDNRPLKLPEFEQHVNQIIYMSAT
PGDYELERVTSDHIIQQIIRPTGLLDPEVEVRPVMGQIDDLVGEINKRAQKDERVFITTLTKRMAEDLTDYLKDMGIKVA
YLHADIKTLERTEIIRDLRLGKYDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNPRSLIQTIGRAARNSDGHVIMYA
DKTTRSMKEAMDETARRREIQTQYNVEHGITPTTIKKDIRDLISVRTDSTDNQEVIDLTQVAFKDLPKDEQMSIIGNLEK
QMKAAAKSLDFEEAAQLRDNVMELKAVL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=331541 FGL89_RS06695 WP_014974741.1 1335223..1337229(+) (uvrB) [Leuconostoc carnosum strain CBA3620]
ATGCGTGAACATGTTGCTGACCACGGCTTTGAAGTGGTTTCAAAATATCAGCCAACAGGCGATCAGCCACGAGCTATTGA
TCAACTCGTGAGGGGTATTAATGCTGGCGTGAAAGAGCAAGTTTTACTTGGTGCTACGGGAACAGGGAAGACTTTCACAA
TTTCTAATGTCATTAAAGATATTAAGAAGCCAACACTGGTATTGAGTCATAATAAGACCTTAGCTGGTCAACTTTATGGT
GAGTTGAAAGAGTTTTTTCCAAATAATGCGGTTGAATATTTTGTGTCCTATTATGATTATTATCAACCAGAAGCTTATGT
CCCTAGTTCTGATACATTTATTGAAAAAGATTCAGCTGTCAATGATGAAATCGATCAATTACGTAACTCAGCAACTAGTT
CGTTGCTATCAAGAAATGATGTCATTGTTGTGGCATCAGTTAGTTCTATTTTTGGATTAGGTGATCCGCATCAGTACCAA
GAACATGTGATTAATTTACGTGTAGGAAATGAATATGGTCGTAATCAGTTAATGATGGATTTGATTAACGTTCAGTTTAC
GCGAAATGATATTGATTTTCACCGTGGTACTTTTCGTGTGCGTGGAGATGTTGTGGAAATTTTCCCAGCATCTGAAGATG
AAATGGCATTACGCGTTGAATTTTTTGGAGATGAAATTGATCGTATTCGTGAAATTAATTCATTAACGGGGGAAACATCA
TCTGAGCGTGACTATGTTGCAATTTATCCAGCTAAACATTTCATGACGGATGATGATCAAATGTCGACTGCTTTGGCAGG
TATTACTGAAGAAATGAATCAACAAGTGGCCTTATTTGAAAAAGAGGGCAAGTTAATAGAGGCTCAACGTATCAAACAGC
GAACAGAGTACGACTTAGCAATGTTAGAAGAAATGGGATTTGTCGGTGGTATTGAAAACTATTCGCGTTGGATGGATGGT
CGCCAAGTTGACGAACCGCCATTTACTTTGCTAGATTTCTTCCCAGATGATTTTCTCGTAGTTGTCGATGAGAGTCATGT
GACCATGCCGCAAATTCGTGGTATGTTCAATGGAGATCGGGCACGTAAAGAAACGTTAGTAAATTATGGTTTTCGTTTGC
CATCGGCACTTGATAATCGACCACTGAAACTGCCTGAGTTTGAACAGCATGTGAACCAAATTATTTATATGTCAGCGACA
CCAGGTGACTATGAATTAGAACGAGTGACGAGTGATCACATTATACAGCAAATCATTCGACCCACTGGGTTATTGGATCC
AGAGGTTGAAGTACGGCCTGTTATGGGACAAATTGATGACTTGGTAGGTGAAATTAATAAACGTGCACAAAAGGATGAAC
GTGTATTTATTACAACCCTAACTAAGCGAATGGCAGAAGATTTAACTGATTATTTAAAGGACATGGGAATCAAGGTAGCC
TATTTACATGCTGATATTAAGACACTTGAACGAACTGAAATTATCCGTGATTTACGTTTAGGTAAATATGATGTGCTGAT
TGGTATTAATTTATTACGTGAAGGTATTGATGTACCTGAAGTGTCCTTAGTTGCTATTTTAGATGCCGATAAGGAAGGCT
TTTTACGTAATCCACGTTCTTTGATTCAGACGATAGGTCGTGCAGCCAGAAACTCGGATGGCCATGTGATTATGTATGCT
GATAAAACGACTAGGTCAATGAAAGAAGCTATGGATGAAACAGCCAGACGACGTGAAATTCAAACACAATATAATGTTGA
ACATGGTATTACACCAACAACAATTAAAAAAGATATTCGCGATTTGATTTCCGTACGTACAGATTCAACCGATAATCAAG
AAGTGATTGATTTGACGCAAGTTGCTTTCAAAGATTTGCCAAAAGATGAACAAATGAGTATTATTGGTAATCTTGAAAAG
CAGATGAAGGCTGCCGCCAAGTCACTAGACTTTGAAGAGGCGGCACAGCTGCGCGATAATGTGATGGAATTAAAAGCCGT
TTTGTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(558-600)

UvrB/uvrC motif (UVR)

(635-666)

UvrB interaction domain (UvrB_inter)

(164-254)

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

Type III restriction enzyme, res subunit (ResIII)

(17-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DDQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

69.865

99.85

0.698
  uvrB Streptococcus pneumoniae D39

69.865

99.85

0.698
  uvrB Streptococcus pneumoniae TIGR4

69.715

99.85

0.696