Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EJN92_RS12080 Genome accession   NZ_CP034464
Coordinates   2763422..2763910 (+) Length   162 a.a.
NCBI ID   WP_126128054.1    Uniprot ID   A0A3Q9BS05
Organism   Undibacterium parvum strain DSM 23061     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2758422..2768910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN92_RS12070 (EJN92_12070) uvrA 2759002..2761953 (-) 2952 WP_126128052.1 excinuclease ABC subunit UvrA -
  EJN92_RS12075 (EJN92_12075) - 2762191..2763372 (+) 1182 WP_126128053.1 MFS transporter -
  EJN92_RS12080 (EJN92_12080) ssb 2763422..2763910 (+) 489 WP_126128054.1 single-stranded DNA-binding protein Machinery gene
  EJN92_RS12085 (EJN92_12085) - 2764240..2764554 (+) 315 WP_126128055.1 hypothetical protein -
  EJN92_RS12090 (EJN92_12090) - 2764877..2766628 (+) 1752 WP_126128056.1 methyl-accepting chemotaxis protein -
  EJN92_RS12095 (EJN92_12095) - 2766753..2767448 (+) 696 WP_126128057.1 transposase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17508.61 Da        Isoelectric Point: 5.9468

>NTDB_id=331488 EJN92_RS12080 WP_126128054.1 2763422..2763910(+) (ssb) [Undibacterium parvum strain DSM 23061]
MASLNKVQIIGNLGRDPETRYMPSGDAMTSITVATTENWKDKATGEKKEATEWHRITFFGKLAEIAGQYLKKGSQVYVEG
SLRTRKYTDKDGVEKYATDIKADTMQMLGSRQGMGGGAPMDDESYGGGAPSAPRQSAAPAPRPAPAARPAPNFSDMDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=331488 EJN92_RS12080 WP_126128054.1 2763422..2763910(+) (ssb) [Undibacterium parvum strain DSM 23061]
ATGGCATCACTCAATAAAGTCCAGATCATTGGCAATCTCGGACGTGATCCGGAAACCCGTTACATGCCCAGCGGCGACGC
CATGACCAGCATCACGGTAGCGACTACCGAGAACTGGAAAGACAAGGCGACCGGCGAAAAGAAAGAAGCGACAGAATGGC
ATCGCATCACTTTCTTCGGTAAGTTGGCTGAAATCGCCGGTCAATACCTGAAAAAAGGCTCACAAGTTTACGTAGAAGGT
AGCTTGCGTACCCGTAAGTACACCGACAAAGACGGCGTAGAAAAATACGCAACCGATATCAAGGCCGACACCATGCAAAT
GCTGGGTAGTCGTCAGGGTATGGGCGGCGGCGCTCCTATGGATGATGAGTCTTACGGTGGCGGCGCACCGTCAGCGCCAC
GTCAAAGCGCAGCACCGGCACCACGTCCTGCACCAGCAGCGCGTCCGGCACCGAATTTCTCTGACATGGATGACGACATC
CCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9BS05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

52.247

100

0.574
  ssb Neisseria meningitidis MC58

51.685

100

0.568
  ssb Vibrio cholerae strain A1552

50.279

100

0.556
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.549

Multiple sequence alignment