Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   EJF26_RS07340 Genome accession   NZ_CP034442
Coordinates   1467698..1467934 (+) Length   78 a.a.
NCBI ID   WP_000484932.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462698..1472934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS07340 comW 1467698..1467934 (+) 237 WP_000484932.1 sigma(X)-activator ComW Regulator
  EJF26_RS07345 - 1468164..1469450 (+) 1287 WP_025168978.1 adenylosuccinate synthase -
  EJF26_RS07350 - 1469935..1470480 (-) 546 WP_000976885.1 hypothetical protein -
  EJF26_RS07355 tadA 1470747..1471214 (+) 468 WP_025168976.1 tRNA adenosine(34) deaminase TadA -
  EJF26_RS07365 - 1471401..1471844 (+) 444 WP_000701999.1 dUTP diphosphatase -
  EJF26_RS07370 - 1471846..1472361 (+) 516 WP_000691243.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9824.27 Da        Isoelectric Point: 6.7153

>NTDB_id=331373 EJF26_RS07340 WP_000484932.1 1467698..1467934(+) (comW) [Streptococcus oralis subsp. dentisani strain F0392]
MFQDIYEQIIEFCDAVEQEYKGLFADKTKWETTHLGYLHYYLIRYKITDERDFIIYHFRTSYRLFLEKFVMKRNFISN

Nucleotide


Download         Length: 237 bp        

>NTDB_id=331373 EJF26_RS07340 WP_000484932.1 1467698..1467934(+) (comW) [Streptococcus oralis subsp. dentisani strain F0392]
ATGTTTCAAGATATCTATGAACAAATTATTGAATTTTGTGATGCTGTTGAGCAGGAGTACAAAGGGTTATTTGCTGATAA
AACGAAATGGGAAACCACACATCTTGGTTATTTGCATTATTATTTAATTCGCTATAAGATTACTGATGAAAGAGATTTTA
TTATCTATCATTTTAGAACATCTTATCGTTTATTTTTAGAAAAATTTGTGATGAAAAGGAATTTTATTTCTAATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

53.247

98.718

0.526
  comW Streptococcus pneumoniae D39

53.247

98.718

0.526
  comW Streptococcus pneumoniae R6

53.247

98.718

0.526
  comW Streptococcus pneumoniae TIGR4

53.247

98.718

0.526
  comW Streptococcus mitis SK321

48.052

98.718

0.474
  comW Streptococcus mitis NCTC 12261

46.753

98.718

0.462

Multiple sequence alignment