Detailed information NTG0331276

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EJ103_RS14350
• Genome accession: NZ_CP034439
• Coordinates: 3191108..3192010 (+)
• Length: 300 a.a.
• NCBI ID: WP_126008289.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. Xi13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3186108..3197010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJ103_RS14330 (EJ103_14330)	nadC	3186462..3187307 (+)	846	WP_126008283.1	carboxylating nicotinate-nucleotide diphosphorylase	-
EJ103_RS14335 (EJ103_14335)	-	3187782..3188219 (+)	438	WP_126008285.1	pilin	-
EJ103_RS14340 (EJ103_14340)	-	3188286..3189629 (+)	1344	WP_164521629.1	O-antigen ligase family protein	-
EJ103_RS14345 (EJ103_14345)	pilC	3189719..3190948 (+)	1230	WP_126008287.1	type II secretion system F family protein	Machinery gene
EJ103_RS14350 (EJ103_14350)	pilD	3191108..3192010 (+)	903	WP_126008289.1	A24 family peptidase	Machinery gene
EJ103_RS14355 (EJ103_14355)	coaE	3192012..3192632 (+)	621	WP_126008291.1	dephospho-CoA kinase	-
EJ103_RS14360 (EJ103_14360)	pilB	3192779..3194455 (+)	1677	WP_126008292.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EJ103_RS14365 (EJ103_14365)	yacG	3194503..3194733 (+)	231	WP_024031401.1	DNA gyrase inhibitor YacG	-
EJ103_RS14370 (EJ103_14370)	-	3194800..3195291 (-)	492	WP_004588607.1	Spy/CpxP family protein refolding chaperone	-
EJ103_RS14375 (EJ103_14375)	-	3195467..3196156 (+)	690	WP_126008294.1	response regulator	-

Sequence

Protein

• Length: 300 a.a.
• Molecular weight: 33031.22 Da
• Isoelectric Point: 5.7436

>NTDB_id=331276 EJ103_RS14350 WP_126008289.1 3191108..3192010(+) (pilD) [Pseudoalteromonas sp. Xi13]
MENFFLDITTAMQSQQWFYLTTVGLVSLCVGSFLNVVIYRLPLMMQREWQSECRLLLEDELTTKPTQASNSEPFNLVKPN
STCPKCNTAIKPWQNIPIISWIILKGKCANCSNPISARYPIVEAITALLSLVIAYSFGATEHALLYIFVTWILVALTFID
IDHMLLPDQLTLPLVWLALIAAVMGLTISPSEAIVGAACGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAVFGALLGWQSL
LTIILLSSVVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWIALLWGAQIQAAYFNLIGY

Nucleotide

• Length: 903 bp

>NTDB_id=331276 EJ103_RS14350 WP_126008289.1 3191108..3192010(+) (pilD) [Pseudoalteromonas sp. Xi13]
ATGGAAAATTTTTTTCTTGATATAACCACTGCGATGCAAAGTCAACAGTGGTTTTATTTAACCACCGTTGGCTTAGTTAG
TTTATGTGTAGGTAGTTTTTTAAATGTAGTTATTTATCGACTGCCGTTAATGATGCAGCGAGAATGGCAAAGTGAATGCA
GGTTACTATTAGAAGATGAGCTAACAACCAAACCTACACAAGCCAGTAACAGTGAGCCATTTAATTTAGTAAAACCTAAT
TCTACCTGCCCTAAATGCAATACCGCAATTAAGCCTTGGCAAAATATCCCTATTATTAGTTGGATTATACTTAAAGGTAA
ATGCGCTAATTGCAGTAACCCAATATCAGCACGTTACCCAATAGTTGAAGCCATTACCGCACTATTGAGTTTAGTTATTG
CCTATAGTTTTGGGGCTACTGAGCACGCCCTTTTATATATTTTTGTTACCTGGATTTTAGTGGCGCTCACCTTTATTGAT
ATTGACCATATGCTACTGCCCGATCAGCTCACTTTACCTTTAGTATGGCTTGCGCTCATAGCCGCTGTAATGGGTTTAAC
AATAAGCCCGAGCGAAGCAATAGTGGGGGCAGCATGCGGCTATTTAAGCCTGTGGAGTGTATTTTGGCTATTTAAGCTAT
TAACCGGTAAAGAAGGCATGGGCTATGGCGATTTTAAGTTACTGGCCGTGTTTGGCGCACTGCTTGGCTGGCAGTCACTA
TTAACCATTATTTTGCTTTCAAGTGTGGTGGGCGCCATTATTGGTATTGCCCTTTTAAGTATCCAAGGTAAAGACAAAGC
AACCCCTATCCCATTTGGCCCCTATTTAGCCATAGCGGGTTGGATAGCACTGCTGTGGGGCGCTCAAATTCAAGCTGCGT
ATTTTAATTTAATTGGTTATTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (148-256)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.093	93.667	0.507
pilD	Vibrio campbellii strain DS40M4	52.431	96	0.503
pilD	Acinetobacter nosocomialis M2	53.285	91.333	0.487
pilD	Acinetobacter baumannii D1279779	53.285	91.333	0.487
pilD	Neisseria gonorrhoeae MS11	44.528	88.333	0.393