Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPSJM_RS08350 | Genome accession | NC_014560 |
| Coordinates | 399253..400263 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664491.1 | Uniprot ID | - |
| Organism | Helicobacter pylori SJM180 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 394253..405263
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSJM_RS01910 (HPSJM_02010) | - | 394373..394747 (-) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
| HPSJM_RS01915 (HPSJM_02015) | - | 395037..395639 (+) | 603 | WP_000291621.1 | outer membrane protein | - |
| HPSJM_RS01925 (HPSJM_02020) | - | 395772..396179 (-) | 408 | WP_000906036.1 | hypothetical protein | - |
| HPSJM_RS01930 (HPSJM_02025) | - | 396182..396424 (-) | 243 | WP_000944413.1 | PP0621 family protein | - |
| HPSJM_RS01935 (HPSJM_02030) | rsmG | 396418..396954 (-) | 537 | WP_001068859.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPSJM_RS01940 (HPSJM_02035) | queA | 396951..397988 (-) | 1038 | WP_000657421.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPSJM_RS01945 (HPSJM_02040) | tatC | 397989..398711 (-) | 723 | WP_000461165.1 | twin-arginine translocase subunit TatC | - |
| HPSJM_RS01950 (HPSJM_02045) | tatB | 398704..399186 (-) | 483 | WP_000467590.1 | Sec-independent protein translocase protein TatB | - |
| HPSJM_RS08350 (HPSJM_02050) | ruvB | 399253..400263 (-) | 1011 | WP_000664491.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPSJM_RS08355 (HPSJM_02055) | panB | 400264..401076 (-) | 813 | WP_000062657.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPSJM_RS01965 (HPSJM_02060) | - | 401224..401946 (+) | 723 | WP_000523326.1 | hypothetical protein | - |
| HPSJM_RS01970 (HPSJM_02065) | - | 401936..402793 (+) | 858 | WP_013356356.1 | outer membrane beta-barrel protein | - |
| HPSJM_RS01975 (HPSJM_02070) | - | 402802..403746 (+) | 945 | WP_000911218.1 | outer membrane beta-barrel protein | - |
| HPSJM_RS01980 (HPSJM_02075) | - | 403756..405078 (+) | 1323 | WP_000522735.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37319.36 Da Isoelectric Point: 6.0715
>NTDB_id=33122 HPSJM_RS08350 WP_000664491.1 399253..400263(-) (ruvB) [Helicobacter pylori SJM180]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKVAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKVAVKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=33122 HPSJM_RS08350 WP_000664491.1 399253..400263(-) (ruvB) [Helicobacter pylori SJM180]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGACTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTCATCATTAAAAAAGTCGCCGTTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTGGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTAGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGGTATTTAGAGCGCACCGCTAAAGGCAGGATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCTACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGACTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTCATCATTAAAAAAGTCGCCGTTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTGGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTAGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGGTATTTAGAGCGCACCGCTAAAGGCAGGATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCTACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
98.214 |
100 |
0.982 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |