Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   EJJ14_RS08000 Genome accession   NZ_CP034393
Coordinates   1525230..1525547 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni subsp. jejuni strain CLB104     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1520230..1530547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJJ14_RS07980 (EJJ14_07980) ctsE 1521099..1522658 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  EJJ14_RS07985 (EJJ14_07985) ctsX 1522648..1523235 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  EJJ14_RS07990 (EJJ14_07990) ctsP 1523239..1523847 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  EJJ14_RS07995 (EJJ14_07995) ctsD 1523840..1525258 (-) 1419 WP_052783256.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  EJJ14_RS08000 (EJJ14_08000) ctsR 1525230..1525547 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  EJJ14_RS08005 (EJJ14_08005) nifJ 1525571..1529131 (-) 3561 WP_002867243.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  EJJ14_RS08010 (EJJ14_08010) - 1529224..1529865 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=331065 EJJ14_RS08000 WP_002851255.1 1525230..1525547(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain CLB104]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=331065 EJJ14_RS08000 WP_002851255.1 1525230..1525547(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain CLB104]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment