Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   EJJ14_RS07995 Genome accession   NZ_CP034393
Coordinates   1523840..1525258 (-) Length   472 a.a.
NCBI ID   WP_052783256.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain CLB104     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1518840..1530258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJJ14_RS07970 (EJJ14_07970) - 1519164..1519928 (+) 765 WP_002855821.1 TSUP family transporter -
  EJJ14_RS07975 (EJJ14_07975) ctsF 1519921..1521102 (-) 1182 WP_002867247.1 type II secretion system F family protein Machinery gene
  EJJ14_RS07980 (EJJ14_07980) ctsE 1521099..1522658 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  EJJ14_RS07985 (EJJ14_07985) ctsX 1522648..1523235 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  EJJ14_RS07990 (EJJ14_07990) ctsP 1523239..1523847 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  EJJ14_RS07995 (EJJ14_07995) ctsD 1523840..1525258 (-) 1419 WP_052783256.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  EJJ14_RS08000 (EJJ14_08000) ctsR 1525230..1525547 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  EJJ14_RS08005 (EJJ14_08005) nifJ 1525571..1529131 (-) 3561 WP_002867243.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  EJJ14_RS08010 (EJJ14_08010) - 1529224..1529865 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53320.97 Da        Isoelectric Point: 6.6184

>NTDB_id=331064 EJJ14_RS07995 WP_052783256.1 1523840..1525258(-) (ctsD) [Campylobacter jejuni subsp. jejuni strain CLB104]
MIRLILILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEI
FNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQN
IEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQN
FNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKES
SKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=331064 EJJ14_RS07995 WP_052783256.1 1523840..1525258(-) (ctsD) [Campylobacter jejuni subsp. jejuni strain CLB104]
ATGATAAGATTAATATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTT
TGATATCAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTG
TTAAAGATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATT
TTTAATTTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAA
GATTTTTAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGC
AAAGTGAATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAAT
ATAGAAAAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGC
AGGTCTTATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTA
AAAAACAAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAAT
TTTAATATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAA
TTTGGGTTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTA
ATCCAAAGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGT
TCTAAAGGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATAT
CTTGCCTGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATA
ATAAACGACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAAT
AATCAAACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAAT
TCCAATCCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTA
TAGTAGATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.576

100

0.996

Multiple sequence alignment