Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPPC_RS08265 | Genome accession | NC_014555 |
| Coordinates | 384911..385921 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664482.1 | Uniprot ID | - |
| Organism | Helicobacter pylori PeCan4 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 379911..390921
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPC_RS01860 (HPPC_01915) | - | 380004..380378 (-) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
| HPPC_RS01865 (HPPC_01920) | - | 380668..381270 (+) | 603 | WP_000559110.1 | outer membrane protein | - |
| HPPC_RS01875 (HPPC_01925) | - | 381402..381809 (-) | 408 | WP_000906101.1 | hypothetical protein | - |
| HPPC_RS01880 (HPPC_01930) | - | 381812..382054 (-) | 243 | WP_000944407.1 | PP0621 family protein | - |
| HPPC_RS01885 (HPPC_01935) | rsmG | 382048..382584 (-) | 537 | WP_001068823.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPPC_RS01890 (HPPC_01940) | queA | 382581..383618 (-) | 1038 | WP_000657323.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPPC_RS01895 (HPPC_01945) | tatC | 383619..384368 (-) | 750 | WP_000461240.1 | twin-arginine translocase subunit TatC | - |
| HPPC_RS01900 (HPPC_01950) | tatB | 384361..384843 (-) | 483 | WP_000467578.1 | Sec-independent protein translocase protein TatB | - |
| HPPC_RS08265 (HPPC_01955) | ruvB | 384911..385921 (-) | 1011 | WP_000664482.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPPC_RS08270 (HPPC_01960) | panB | 385922..386734 (-) | 813 | WP_000062659.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPPC_RS01915 (HPPC_01965) | - | 386883..387605 (+) | 723 | WP_000505925.1 | hypothetical protein | - |
| HPPC_RS01920 (HPPC_01970) | - | 387595..388461 (+) | 867 | WP_013356125.1 | outer membrane beta-barrel protein | - |
| HPPC_RS01925 (HPPC_01975) | - | 388470..389414 (+) | 945 | WP_000911234.1 | outer membrane beta-barrel protein | - |
| HPPC_RS01930 (HPPC_01980) | - | 389424..390746 (+) | 1323 | WP_000423133.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37293.28 Da Isoelectric Point: 6.0715
>NTDB_id=33083 HPPC_RS08265 WP_000664482.1 384911..385921(-) (ruvB) [Helicobacter pylori PeCan4]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAATKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=33083 HPPC_RS08265 WP_000664482.1 384911..385921(-) (ruvB) [Helicobacter pylori PeCan4]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTCATTGATGAAATCCACCGGCTCAGTCCAGCGATTGAAGAGGTTTTATACCCGGCGATGGAGGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCACTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAATACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACCTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTCATTGATGAAATCCACCGGCTCAGTCCAGCGATTGAAGAGGTTTTATACCCGGCGATGGAGGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACTCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCACTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GCAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAATACGATTGCAGCGTCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACCTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
98.214 |
100 |
0.982 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |