Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FQ758_RS04640 Genome accession   NZ_CP042269
Coordinates   767397..767870 (+) Length   157 a.a.
NCBI ID   WP_003142895.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HOU1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 762397..772870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQ758_RS04625 (FQ758_04620) bfr 762405..762869 (+) 465 WP_003093668.1 bacterioferritin -
  FQ758_RS04630 (FQ758_04625) uvrA 762941..765778 (-) 2838 WP_003118151.1 excinuclease ABC subunit UvrA Machinery gene
  FQ758_RS04635 (FQ758_04630) - 765992..767380 (+) 1389 WP_149586400.1 MFS transporter -
  FQ758_RS04640 (FQ758_04635) ssb 767397..767870 (+) 474 WP_003142895.1 single-stranded DNA-binding protein Machinery gene
  FQ758_RS04645 (FQ758_04640) pchA 767959..769397 (-) 1439 Protein_724 isochorismate synthase PchA -
  FQ758_RS04650 (FQ758_04645) pchB 769394..769699 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  FQ758_RS04655 (FQ758_04650) pchC 769699..770454 (-) 756 WP_031685258.1 pyochelin biosynthesis editing thioesterase PchC -
  FQ758_RS04660 (FQ758_04655) pchD 770451..772094 (-) 1644 WP_023102834.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17664.49 Da        Isoelectric Point: 4.9746

>NTDB_id=330790 FQ758_RS04640 WP_003142895.1 767397..767870(+) (ssb) [Pseudomonas aeruginosa strain HOU1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQPAPQPAQDYDSFDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=330790 FQ758_RS04640 WP_003142895.1 767397..767870(+) (ssb) [Pseudomonas aeruginosa strain HOU1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.714

100

0.643
  ssb Glaesserella parasuis strain SC1401

51.913

100

0.605
  ssb Neisseria meningitidis MC58

45.81

100

0.522
  ssb Neisseria gonorrhoeae MS11

45.251

100

0.516