Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FQ758_RS03495 Genome accession   NZ_CP042269
Coordinates   556172..556897 (-) Length   241 a.a.
NCBI ID   WP_126577575.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HOU1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 551172..561897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQ758_RS03470 (FQ758_03470) - 551645..552160 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  FQ758_RS03475 (FQ758_03475) rarD 552849..553745 (-) 897 WP_003103301.1 EamA family transporter RarD -
  FQ758_RS03480 (FQ758_03480) - 553948..554922 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  FQ758_RS03485 (FQ758_03485) - 554984..555742 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  FQ758_RS03490 (FQ758_03490) - 555810..556130 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  FQ758_RS03495 (FQ758_03495) comF 556172..556897 (-) 726 WP_126577575.1 ComF family protein Machinery gene
  FQ758_RS03500 (FQ758_03500) - 557036..557329 (-) 294 WP_003113255.1 hypothetical protein -
  FQ758_RS03505 (FQ758_03505) - 557383..558309 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  FQ758_RS03510 (FQ758_03510) - 558427..559185 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  FQ758_RS03515 (FQ758_03515) - 559262..559510 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  FQ758_RS03520 (FQ758_03520) - 559521..560897 (+) 1377 WP_126577574.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  FQ758_RS03525 (FQ758_03525) - 560899..561777 (+) 879 WP_126577573.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27059.51 Da        Isoelectric Point: 11.0325

>NTDB_id=330786 FQ758_RS03495 WP_126577575.1 556172..556897(-) (comF) [Pseudomonas aeruginosa strain HOU1]
MSFPLRPLTRWLLPPPACLLCAARSDQPARPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPSYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPHPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=330786 FQ758_RS03495 WP_126577575.1 556172..556897(-) (comF) [Pseudomonas aeruginosa strain HOU1]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGGCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGTCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACATCTGCGGCAACGCTACGCCGAAGGCCTGCCGCACCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.017

100

0.382
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361

Multiple sequence alignment