Detailed information NTG0330786

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: EJA05_RS08035
• Genome accession: NZ_CP034338
• Coordinates: 1697090..1699309 (+)
• Length: 739 a.a.
• NCBI ID: WP_125857885.1
• Uniprot ID: -
• Organism: Pseudomonas oryziphila strain 1257
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1692090..1704309

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJA05_RS08005 (EJA05_08005)	-	1692613..1692864 (-)	252	WP_125857880.1	DUF3077 domain-containing protein	-
EJA05_RS08010 (EJA05_08010)	-	1692861..1693100 (-)	240	WP_125857881.1	hypothetical protein	-
EJA05_RS08015 (EJA05_08015)	-	1693968..1694591 (+)	624	WP_125857882.1	glutathione S-transferase	-
EJA05_RS08020 (EJA05_08020)	-	1694727..1695659 (+)	933	WP_125857883.1	ABC transporter ATP-binding protein	-
EJA05_RS08025 (EJA05_08025)	-	1695656..1696435 (+)	780	WP_125463214.1	ABC transporter permease	-
EJA05_RS08030 (EJA05_08030)	-	1696319..1696945 (-)	627	WP_125857884.1	DUF2062 domain-containing protein	-
EJA05_RS08035 (EJA05_08035)	comA	1697090..1699309 (+)	2220	WP_125857885.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
EJA05_RS08050 (EJA05_08050)	exbB	1699724..1700359 (+)	636	WP_138221286.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
EJA05_RS08055 (EJA05_08055)	-	1700356..1700790 (+)	435	WP_125857886.1	biopolymer transporter ExbD	-
EJA05_RS08060 (EJA05_08060)	lpxK	1700790..1701794 (+)	1005	WP_125857887.1	tetraacyldisaccharide 4'-kinase	-
EJA05_RS08065 (EJA05_08065)	-	1701835..1702020 (+)	186	WP_125463219.1	Trm112 family protein	-
EJA05_RS08070 (EJA05_08070)	kdsB	1702017..1702781 (+)	765	WP_125857888.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
EJA05_RS08075 (EJA05_08075)	-	1702781..1703245 (+)	465	WP_125857889.1	low molecular weight protein-tyrosine-phosphatase	-
EJA05_RS08080 (EJA05_08080)	murB	1703242..1704261 (+)	1020	WP_125857890.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 739 a.a.
• Molecular weight: 79954.79 Da
• Isoelectric Point: 11.2280

>NTDB_id=330786 EJA05_RS08035 WP_125857885.1 1697090..1699309(+) (comA) [Pseudomonas oryziphila strain 1257]
MRTGMLALVLGLLSLRFLPALPPVGWLLALLLLGLACLRTRGWPLGCYLLGLCWACWSAQQALDDRLAVALDGRTLWLEG
RVVGLPARTEHGVRFELEQTSSRRAELPQRLQLSWFDGPGLRGGERWRLAVNLRRPHGLLNPHGPDREATLLARRTGASG
TVKAGERLGAPAHDWRDGIRQRLLAVDAHGREAALAALVLGDGAGLARQDWQALQATGTVHLLVISGQHIGLLAGLVYGG
VAGLARLGAWPRRLPWLPWACGLAMGAALLYGWLAGFGVPVQRACLMLAVVLLWRLRFRQLGVGLPLLLALLGVLLVEPL
ASLLPGFWLSFAAVAVLALCFSARLGAWRPWRAWTRAQWVIAVGLLPVLLALGLPISLTAPLANLLAVPWLSLAVLPLAL
LGTALLPLPWLGEGLLWLAGASLHGLFGWLTQVARLVPAWIAEPLPPWAGLLVGLGALLVLLPRGVPLRAPGAVLMLALW
APREQVPHGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPAMGASDLGESVVLPTLRKLGVRQLDLMLISHAHADHAGGAV
AVHRGLPVKRVLAGEATALAAGLRGQSCKSGERWQWDGVDFELWQWPAGPNSNERSCVLRVEANGERLLLAGDMEAGAER
AWLAATEDPRIDWLQSPHHGSRTSSSEALIRAMAPRGVLISRGRHNGFGHPHPQVIERYRRQGMSIHDTALEGALRLWLG
RHGGVEGGRGQRRFWRDQE

Nucleotide

• Length: 2220 bp

>NTDB_id=330786 EJA05_RS08035 WP_125857885.1 1697090..1699309(+) (comA) [Pseudomonas oryziphila strain 1257]
ATGCGCACAGGGATGCTTGCGCTCGTGCTCGGGCTGTTGAGCCTGCGCTTTCTGCCTGCTCTGCCACCGGTCGGGTGGTT
GCTTGCACTGCTATTGCTGGGGCTGGCCTGCCTGCGTACGCGGGGCTGGCCGCTTGGCTGTTACCTGTTGGGGCTGTGCT
GGGCGTGCTGGTCGGCGCAGCAGGCACTGGATGATCGGCTGGCCGTGGCACTGGACGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCGGCGCGCACCGAGCACGGTGTGCGCTTCGAGCTGGAGCAGACCAGCTCGCGTCGGGCCGAGTT
GCCGCAGCGGTTGCAACTGAGCTGGTTCGATGGCCCTGGGTTACGCGGCGGGGAGCGCTGGCGGCTGGCGGTCAACTTGC
GGCGCCCGCATGGGTTGCTCAACCCCCATGGCCCGGACCGCGAGGCTACCCTGCTGGCACGGCGGACCGGCGCGAGCGGC
ACGGTCAAGGCGGGTGAGCGGCTGGGCGCTCCCGCCCATGACTGGCGTGACGGTATCCGCCAACGCTTGCTGGCAGTCGA
TGCCCATGGGCGTGAGGCGGCCCTGGCGGCGCTGGTGCTGGGCGATGGCGCGGGGCTGGCGCGCCAGGACTGGCAGGCCC
TGCAAGCCACCGGCACGGTCCACCTGCTGGTGATCTCCGGGCAGCATATCGGGCTGCTGGCCGGGTTGGTCTATGGCGGG
GTGGCCGGGCTGGCCCGCCTGGGCGCCTGGCCGCGACGCCTGCCTTGGTTGCCCTGGGCCTGCGGCCTGGCCATGGGGGC
GGCGCTGTTGTACGGCTGGCTGGCGGGCTTTGGCGTGCCGGTACAGCGTGCCTGCCTGATGCTGGCGGTGGTACTGCTGT
GGCGCCTGCGCTTTCGCCAGCTGGGCGTGGGGCTGCCCTTGTTGCTGGCGCTGCTGGGGGTGTTGCTGGTCGAGCCGCTG
GCCAGCCTGTTGCCGGGCTTCTGGCTATCGTTCGCCGCCGTGGCGGTGTTGGCGCTGTGTTTTTCTGCCCGGCTGGGTGC
CTGGCGGCCTTGGCGGGCCTGGACGCGGGCGCAGTGGGTGATCGCCGTGGGCCTGCTGCCGGTGCTGCTGGCGCTGGGCC
TGCCGATCAGCCTTACGGCGCCGCTGGCCAACCTGCTGGCGGTGCCGTGGCTGAGCCTGGCGGTGCTGCCCTTGGCCTTG
CTCGGTACCGCGCTGTTGCCGCTGCCCTGGCTGGGGGAGGGGCTGTTGTGGCTGGCGGGCGCTTCGCTGCACGGCCTGTT
TGGCTGGCTTACCCAGGTGGCAAGGCTTGTGCCGGCGTGGATTGCCGAGCCACTGCCGCCGTGGGCCGGGCTGCTGGTGG
GGCTTGGCGCGTTGCTGGTGCTGTTGCCTCGGGGCGTGCCCTTGCGTGCGCCGGGTGCGGTCCTGATGCTGGCCCTGTGG
GCGCCACGTGAGCAGGTGCCGCATGGCCAGGTCGAAGTCTGGCAACTGGACGTTGGCCAAGGGCTGGCGGTGTTGCTGCG
CACCCGCCAGCACAGCCTGTTGTATGACGCCGGCCCCGCGATGGGGGCAAGCGACCTTGGGGAAAGCGTGGTGCTGCCGA
CCTTGCGCAAGCTCGGGGTGCGGCAGTTGGACCTGATGCTGATCAGCCATGCCCATGCCGACCATGCCGGGGGCGCCGTA
GCCGTTCATCGTGGGCTGCCGGTGAAACGGGTGTTGGCCGGCGAAGCGACGGCGTTGGCGGCAGGCTTGCGTGGCCAGTC
CTGCAAGAGTGGCGAGCGCTGGCAATGGGATGGTGTCGATTTCGAGCTCTGGCAATGGCCGGCCGGGCCCAATAGCAACG
AGCGGTCCTGTGTGCTGCGGGTCGAGGCCAATGGCGAGCGGCTGTTGCTGGCAGGCGACATGGAGGCCGGGGCCGAGCGG
GCCTGGCTGGCCGCGACGGAGGATCCGCGCATCGACTGGCTGCAGTCGCCGCATCATGGCAGCCGCACGTCGTCCAGCGA
GGCGCTCATCAGGGCCATGGCCCCGCGCGGGGTGTTGATATCGCGCGGGCGGCACAATGGGTTCGGGCATCCTCATCCGC
AGGTTATCGAGCGCTATCGGCGGCAGGGTATGAGCATTCATGACACGGCCTTGGAGGGCGCACTGCGGTTGTGGTTGGGG
CGCCATGGTGGGGTGGAAGGGGGGCGGGGGCAGCGGCGGTTCTGGCGCGATCAGGAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-678)

• Competence protein (Competence) (198-462)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.583	97.429	0.581
comA	Ralstonia pseudosolanacearum GMI1000	36.548	100	0.415