Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EJA05_RS08050 Genome accession   NZ_CP034338
Coordinates   1699724..1700359 (+) Length   211 a.a.
NCBI ID   WP_138221286.1    Uniprot ID   -
Organism   Pseudomonas oryziphila strain 1257     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1694724..1705359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJA05_RS08020 (EJA05_08020) - 1694727..1695659 (+) 933 WP_125857883.1 ABC transporter ATP-binding protein -
  EJA05_RS08025 (EJA05_08025) - 1695656..1696435 (+) 780 WP_125463214.1 ABC transporter permease -
  EJA05_RS08030 (EJA05_08030) - 1696319..1696945 (-) 627 WP_125857884.1 DUF2062 domain-containing protein -
  EJA05_RS08035 (EJA05_08035) comA 1697090..1699309 (+) 2220 WP_125857885.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EJA05_RS08050 (EJA05_08050) exbB 1699724..1700359 (+) 636 WP_138221286.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EJA05_RS08055 (EJA05_08055) - 1700356..1700790 (+) 435 WP_125857886.1 biopolymer transporter ExbD -
  EJA05_RS08060 (EJA05_08060) lpxK 1700790..1701794 (+) 1005 WP_125857887.1 tetraacyldisaccharide 4'-kinase -
  EJA05_RS08065 (EJA05_08065) - 1701835..1702020 (+) 186 WP_125463219.1 Trm112 family protein -
  EJA05_RS08070 (EJA05_08070) kdsB 1702017..1702781 (+) 765 WP_125857888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EJA05_RS08075 (EJA05_08075) - 1702781..1703245 (+) 465 WP_125857889.1 low molecular weight protein-tyrosine-phosphatase -
  EJA05_RS08080 (EJA05_08080) murB 1703242..1704261 (+) 1020 WP_125857890.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=330787 EJA05_RS08050 WP_138221286.1 1699724..1700359(+) (exbB) [Pseudomonas oryziphila strain 1257]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=330787 EJA05_RS08050 WP_138221286.1 1699724..1700359(+) (exbB) [Pseudomonas oryziphila strain 1257]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATCGTTGCCATGGCAATCGTCGT
TGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTATAT
CAGCACCCTCGGCACCATCGCTGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTCGCCGGTGGTATTTCCAAGGCCCTGGTGACCACGGCC
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGTTGCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment