Detailed information NTG0330763

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: EI693_RS07880
• Genome accession: NZ_CP034337
• Coordinates: 1676260..1678479 (+)
• Length: 739 a.a.
• NCBI ID: WP_125463216.1
• Uniprot ID: -
• Organism: Pseudomonas oryziphila strain 2014
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1671260..1683479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EI693_RS07855 (EI693_07855)	-	1672435..1672896 (-)	462	WP_125463211.1	hypothetical protein	-
EI693_RS07860 (EI693_07860)	-	1673138..1673761 (+)	624	WP_125463212.1	glutathione S-transferase	-
EI693_RS07865 (EI693_07865)	-	1673897..1674829 (+)	933	WP_125463213.1	ABC transporter ATP-binding protein	-
EI693_RS07870 (EI693_07870)	-	1674826..1675605 (+)	780	WP_125463214.1	ABC transporter permease	-
EI693_RS07875 (EI693_07875)	-	1675489..1676115 (-)	627	WP_125463215.1	DUF2062 domain-containing protein	-
EI693_RS07880 (EI693_07880)	comA	1676260..1678479 (+)	2220	WP_125463216.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
EI693_RS07885 (EI693_07885)	exbB	1678630..1679265 (+)	636	WP_138221286.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
EI693_RS07890 (EI693_07890)	-	1679262..1679696 (+)	435	WP_125463217.1	biopolymer transporter ExbD	-
EI693_RS07895 (EI693_07895)	lpxK	1679696..1680700 (+)	1005	WP_125463218.1	tetraacyldisaccharide 4'-kinase	-
EI693_RS07900 (EI693_07900)	-	1680741..1680926 (+)	186	WP_125463219.1	Trm112 family protein	-
EI693_RS07905 (EI693_07905)	kdsB	1680923..1681687 (+)	765	WP_125463220.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
EI693_RS07910 (EI693_07910)	-	1681687..1682151 (+)	465	WP_125463221.1	low molecular weight protein-tyrosine-phosphatase	-
EI693_RS07915 (EI693_07915)	murB	1682148..1683167 (+)	1020	WP_125463222.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 739 a.a.
• Molecular weight: 79682.41 Da
• Isoelectric Point: 10.2507

>NTDB_id=330763 EI693_RS07880 WP_125463216.1 1676260..1678479(+) (comA) [Pseudomonas oryziphila strain 2014]
MRTGMLALVLGLLSLRFLPALPPVGWLLALSLLGLACLHTRGWPLGCYLLGLCWACWSAQQALDDRLAAALDGRTLWLEG
RVVGLPARTEHGVRFELEQASSRRAELPQRLQLSWFDGPGLRGGERWRLAVNLRRPHGLLNPHGPDREATLLARRIGATG
TVKAGERLGAPAHDWRDGIRQRLLAVDAHGREAALAALVLGDGAGLARQDWQALQATGTVHLLVISGQHIGLLAGLVYGG
VAGLARLGAWPRRLPWLPWACGLAMGAALLYGWLAGFGVPVQRACLMLAVVLLWRLRFRQLGVGPPLLLALLGVLLVEPL
ASLLPGFWLSFAAVAVLALCFSARLGAWRPWQAWTRAQWVIAVGLLPVLLALGLPISLTAPLANLLAVPWLSLAVLPLAL
LGTALLPLPWLGEGLLWLAGASLHGLFGWLAQVAGLVPAWIGEPLPLWAGLLVGLGALLVLLPRGVPLRVPGAVLLLALW
APREQVPHGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPAMGESDLGESVVLPTLRKLGVRQLDLMLISHAHADHAGGAG
AVHRGLPVKRVLAGEAMALAAGLHGQPCKSGERWQWDGVDFELWHWPGGPNSNERSCVLRVEANGERLLLAGDMEAGAER
AWLAAMEDTRIDWLQSPHHGSRTSSSEAIIRAMAPRGVLISRGRHNGFGHPHPQVIERYRRQGMSIHDTALEGALRLLLG
DHGGVEGARGQRRFWRDQE

Nucleotide

• Length: 2220 bp

>NTDB_id=330763 EI693_RS07880 WP_125463216.1 1676260..1678479(+) (comA) [Pseudomonas oryziphila strain 2014]
ATGCGCACAGGGATGCTTGCGCTCGTGCTCGGGCTGCTGAGCCTGCGCTTTCTGCCTGCTCTGCCACCGGTCGGGTGGTT
GCTTGCATTGTCATTGCTGGGGCTGGCCTGCCTGCATACGCGAGGCTGGCCGCTTGGCTGTTACCTGTTGGGGCTTTGCT
GGGCGTGCTGGTCGGCGCAGCAGGCATTGGATGATCGGCTGGCCGCGGCACTGGACGGGCGTACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCGGCGCGCACCGAGCACGGTGTGCGCTTCGAGCTGGAGCAGGCCAGCTCGCGTCGGGCCGAGTT
GCCGCAGCGGTTGCAACTGAGCTGGTTCGATGGCCCCGGGTTACGCGGCGGGGAGCGCTGGCGACTGGCGGTCAACTTGC
GGCGCCCGCATGGGTTGCTCAACCCCCATGGCCCGGACCGCGAGGCTACCCTGCTGGCACGGCGGATCGGCGCGACCGGC
ACGGTCAAGGCGGGTGAGCGGCTGGGCGCTCCCGCCCATGACTGGCGTGACGGTATCCGCCAACGCTTGCTGGCGGTCGA
CGCCCATGGGCGTGAGGCGGCCCTGGCGGCGCTGGTGCTGGGCGATGGCGCGGGGCTGGCGCGCCAGGACTGGCAGGCCC
TGCAAGCCACCGGCACGGTCCACCTGCTGGTGATCTCCGGGCAGCATATCGGGCTGCTGGCCGGGTTGGTCTATGGCGGG
GTGGCCGGGCTGGCCCGCCTGGGCGCCTGGCCGCGACGCCTGCCTTGGTTGCCCTGGGCCTGCGGCCTGGCCATGGGGGC
GGCGCTGTTGTACGGCTGGCTGGCGGGCTTTGGCGTGCCGGTACAGCGTGCCTGCCTGATGCTGGCGGTGGTACTGCTGT
GGCGCCTGCGCTTTCGCCAGCTGGGCGTGGGGCCGCCCTTGTTGCTGGCGCTGCTGGGGGTGTTGCTGGTCGAGCCGCTG
GCCAGCCTGCTGCCGGGCTTCTGGCTGTCGTTCGCCGCCGTGGCGGTGCTGGCGCTGTGTTTTTCCGCCCGGCTGGGCGC
CTGGCGGCCTTGGCAGGCCTGGACGCGGGCGCAATGGGTGATCGCCGTGGGCCTACTGCCGGTGTTGTTGGCGCTGGGCC
TGCCGATCAGCCTTACGGCGCCGCTGGCCAACCTGCTGGCGGTACCGTGGCTGAGCCTGGCGGTGCTGCCCTTGGCCTTG
CTCGGTACCGCGCTGTTGCCGCTGCCCTGGCTGGGGGAGGGGCTGTTGTGGCTGGCGGGCGCTTCGCTGCACGGCCTGTT
TGGCTGGCTTGCCCAGGTGGCAGGGCTGGTGCCGGCGTGGATTGGCGAGCCACTGCCGCTGTGGGCCGGGCTGCTGGTGG
GGCTTGGCGCGTTGCTGGTGCTGTTGCCTCGGGGCGTGCCCTTGCGTGTGCCGGGTGCGGTCCTGTTGCTGGCCCTGTGG
GCGCCACGTGAGCAGGTGCCGCATGGTCAGGTCGAAGTCTGGCAACTGGACGTTGGCCAAGGGCTGGCGGTGTTGCTGCG
CACCCGCCAGCACAGCCTGTTGTATGACGCCGGGCCTGCGATGGGAGAGAGCGACCTGGGCGAAAGCGTGGTGCTGCCGA
CCTTGCGCAAGCTTGGGGTGCGGCAGTTGGACCTGATGCTGATCAGCCATGCCCATGCCGACCATGCCGGGGGCGCCGGG
GCCGTTCATCGCGGGCTGCCGGTGAAACGGGTGCTGGCCGGCGAAGCGATGGCGTTGGCGGCAGGCTTGCACGGCCAGCC
CTGCAAGAGTGGCGAGCGCTGGCAGTGGGATGGTGTCGATTTCGAGCTCTGGCACTGGCCGGGCGGGCCCAACAGCAATG
AGCGTTCCTGTGTGCTGCGGGTCGAGGCCAATGGCGAGCGGCTGCTGCTGGCAGGCGACATGGAGGCAGGGGCCGAGCGG
GCCTGGCTGGCCGCGATGGAGGACACGCGCATCGACTGGCTGCAGTCGCCACACCATGGCAGTCGCACGTCGTCCAGCGA
GGCGATCATCAGGGCCATGGCCCCGCGAGGGGTGTTGATATCGCGCGGGCGGCACAATGGGTTCGGGCATCCTCATCCGC
AGGTAATCGAGCGCTATCGGCGACAGGGTATGAGCATTCATGACACGGCCTTGGAGGGCGCACTGCGGTTGCTGTTAGGG
GACCATGGTGGGGTGGAGGGCGCGCGGGGGCAGCGGCGGTTCTGGCGCGATCAGGAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-677)

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.861	97.429	0.583
comA	Ralstonia pseudosolanacearum GMI1000	37.215	100	0.419