Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EI693_RS07885 Genome accession   NZ_CP034337
Coordinates   1678630..1679265 (+) Length   211 a.a.
NCBI ID   WP_138221286.1    Uniprot ID   -
Organism   Pseudomonas oryziphila strain 2014     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1673630..1684265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EI693_RS07865 (EI693_07865) - 1673897..1674829 (+) 933 WP_125463213.1 ABC transporter ATP-binding protein -
  EI693_RS07870 (EI693_07870) - 1674826..1675605 (+) 780 WP_125463214.1 ABC transporter permease -
  EI693_RS07875 (EI693_07875) - 1675489..1676115 (-) 627 WP_125463215.1 DUF2062 domain-containing protein -
  EI693_RS07880 (EI693_07880) comA 1676260..1678479 (+) 2220 WP_125463216.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EI693_RS07885 (EI693_07885) exbB 1678630..1679265 (+) 636 WP_138221286.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EI693_RS07890 (EI693_07890) - 1679262..1679696 (+) 435 WP_125463217.1 biopolymer transporter ExbD -
  EI693_RS07895 (EI693_07895) lpxK 1679696..1680700 (+) 1005 WP_125463218.1 tetraacyldisaccharide 4'-kinase -
  EI693_RS07900 (EI693_07900) - 1680741..1680926 (+) 186 WP_125463219.1 Trm112 family protein -
  EI693_RS07905 (EI693_07905) kdsB 1680923..1681687 (+) 765 WP_125463220.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EI693_RS07910 (EI693_07910) - 1681687..1682151 (+) 465 WP_125463221.1 low molecular weight protein-tyrosine-phosphatase -
  EI693_RS07915 (EI693_07915) murB 1682148..1683167 (+) 1020 WP_125463222.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=330764 EI693_RS07885 WP_138221286.1 1678630..1679265(+) (exbB) [Pseudomonas oryziphila strain 2014]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=330764 EI693_RS07885 WP_138221286.1 1678630..1679265(+) (exbB) [Pseudomonas oryziphila strain 2014]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATCGTTGCCATGGCAATCGTCGT
TGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGGGTCATCCACGAGCTGGAGCGCTATAT
CAGCACCCTCGGTACCATCGCTGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTCGCCGGTGGTATTTCCAAGGCCCTGGTGACCACGGCC
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGTTGCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment