Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EI562_RS11290 | Genome accession | NZ_CP034336 |
| Coordinates | 2236310..2236846 (-) | Length | 178 a.a. |
| NCBI ID | WP_006785953.1 | Uniprot ID | - |
| Organism | Enterobacter asburiae strain CAV1043 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2169920..2248663 | 2236310..2236846 | within | 0 |
Gene organization within MGE regions
Location: 2169920..2248663
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EI562_RS10940 (EI562_10940) | - | 2170150..2171151 (-) | 1002 | WP_006781417.1 | site-specific integrase | - |
| EI562_RS10945 (EI562_10945) | - | 2171209..2172852 (-) | 1644 | WP_006781415.1 | conjugal transfer nickase/helicase domain-containing protein | - |
| EI562_RS10950 (EI562_10950) | - | 2172919..2174427 (-) | 1509 | WP_006781413.1 | UvrD-helicase domain-containing protein | - |
| EI562_RS10955 (EI562_10955) | - | 2174556..2175239 (-) | 684 | WP_006781411.1 | N-6 DNA methylase | - |
| EI562_RS10960 (EI562_10960) | - | 2175348..2176280 (-) | 933 | WP_006781409.1 | DUF1281 domain-containing protein | - |
| EI562_RS10965 (EI562_10965) | - | 2176386..2177372 (-) | 987 | WP_006781408.1 | ArdC family protein | - |
| EI562_RS10970 (EI562_10970) | - | 2177454..2177801 (-) | 348 | WP_006781405.1 | hypothetical protein | - |
| EI562_RS10975 (EI562_10975) | - | 2177869..2178471 (-) | 603 | WP_006781404.1 | DUF3085 domain-containing protein | - |
| EI562_RS10980 (EI562_10980) | - | 2178547..2179194 (-) | 648 | WP_006781402.1 | hypothetical protein | - |
| EI562_RS10985 (EI562_10985) | - | 2179279..2179644 (-) | 366 | WP_006781400.1 | hypothetical protein | - |
| EI562_RS25090 | - | 2180107..2180475 (-) | 369 | WP_154283625.1 | hypothetical protein | - |
| EI562_RS11010 (EI562_11010) | pcoE | 2182971..2183405 (-) | 435 | WP_004388336.1 | copper resistance system metallochaperone PcoE | - |
| EI562_RS11015 (EI562_11015) | pcoS | 2183621..2185021 (-) | 1401 | WP_006785898.1 | copper resistance membrane spanning protein PcoS | - |
| EI562_RS11020 (EI562_11020) | pcoR | 2185018..2185698 (-) | 681 | WP_001188930.1 | copper response regulator transcription factor PcoR | - |
| EI562_RS11025 (EI562_11025) | pcoD | 2185753..2186631 (-) | 879 | WP_229692861.1 | copper resistance inner membrane protein PcoD | - |
| EI562_RS11030 (EI562_11030) | pcoC | 2186687..2187067 (-) | 381 | WP_000025662.1 | copper resistance system metallochaperone PcoC | - |
| EI562_RS11035 (EI562_11035) | pcoB | 2187107..2187997 (-) | 891 | WP_006785895.1 | copper resistance outer membrane transporter PcoB | - |
| EI562_RS11040 (EI562_11040) | pcoA | 2188003..2189820 (-) | 1818 | WP_000925242.1 | multicopper oxidase PcoA | - |
| EI562_RS11045 (EI562_11045) | - | 2190054..2190503 (+) | 450 | WP_001023257.1 | copper resistance protein | - |
| EI562_RS11050 (EI562_11050) | - | 2190792..2191529 (+) | 738 | WP_004118669.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| EI562_RS11055 (EI562_11055) | - | 2191563..2191760 (-) | 198 | WP_000843497.1 | DUF2933 domain-containing protein | - |
| EI562_RS11060 (EI562_11060) | silP | 2191801..2194272 (-) | 2472 | WP_129244003.1 | Ag(+)-translocating P-type ATPase SilP | - |
| EI562_RS11065 (EI562_11065) | - | 2194370..2194810 (-) | 441 | WP_002436620.1 | DUF411 domain-containing protein | - |
| EI562_RS11070 (EI562_11070) | silA | 2194897..2198043 (-) | 3147 | WP_000574021.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
| EI562_RS11075 (EI562_11075) | silB | 2198054..2199346 (-) | 1293 | WP_001485328.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
| EI562_RS11080 (EI562_11080) | cusF | 2199460..2199813 (-) | 354 | WP_001246153.1 | cation efflux system protein CusF | - |
| EI562_RS11085 (EI562_11085) | silC | 2199842..2201227 (-) | 1386 | WP_000475503.1 | Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC | - |
| EI562_RS11090 (EI562_11090) | silR | 2201417..2202097 (+) | 681 | WP_000697968.1 | copper/silver response regulator transcription factor SilR | - |
| EI562_RS11095 (EI562_11095) | silS | 2202090..2203565 (+) | 1476 | WP_000555738.1 | copper/silver sensor histidine kinase SilS | - |
| EI562_RS11100 (EI562_11100) | silE | 2203815..2204246 (+) | 432 | WP_006785880.1 | silver-binding protein SilE | - |
| EI562_RS11105 (EI562_11105) | - | 2204395..2204745 (+) | 351 | WP_006785879.1 | DUF305 domain-containing protein | - |
| EI562_RS11110 (EI562_11110) | - | 2204912..2205595 (-) | 684 | Protein_2157 | TOPRIM nucleotidyl transferase/hydrolase domain-containing protein | - |
| EI562_RS11120 (EI562_11120) | - | 2207160..2207777 (+) | 618 | WP_020899211.1 | recombinase family protein | - |
| EI562_RS11125 (EI562_11125) | - | 2207846..2208745 (-) | 900 | WP_006786007.1 | integrase domain-containing protein | - |
| EI562_RS11130 (EI562_11130) | - | 2209677..2210375 (-) | 699 | WP_020899212.1 | hypothetical protein | - |
| EI562_RS25330 | - | 2210436..2210627 (-) | 192 | WP_202816119.1 | hypothetical protein | - |
| EI562_RS11140 (EI562_11140) | umuC | 2211133..2212404 (-) | 1272 | WP_023310105.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| EI562_RS11145 (EI562_11145) | umuD | 2212407..2212844 (-) | 438 | WP_029376740.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| EI562_RS11150 (EI562_11150) | - | 2213531..2215051 (-) | 1521 | WP_006785984.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| EI562_RS11155 (EI562_11155) | - | 2215054..2215392 (-) | 339 | WP_020899218.1 | hypothetical protein | - |
| EI562_RS11160 (EI562_11160) | - | 2215403..2216878 (-) | 1476 | WP_020899219.1 | integrating conjugative element protein | - |
| EI562_RS11165 (EI562_11165) | - | 2216878..2217870 (-) | 993 | WP_020899220.1 | TIGR03756 family integrating conjugative element protein | - |
| EI562_RS11170 (EI562_11170) | - | 2217867..2218265 (-) | 399 | WP_006785980.1 | TIGR03757 family integrating conjugative element protein | - |
| EI562_RS11175 (EI562_11175) | - | 2218602..2219147 (+) | 546 | WP_223151192.1 | hypothetical protein | - |
| EI562_RS11180 (EI562_11180) | - | 2219260..2219637 (-) | 378 | WP_004115528.1 | hypothetical protein | - |
| EI562_RS11185 (EI562_11185) | - | 2219634..2222492 (-) | 2859 | WP_023202704.1 | conjugative transfer ATPase | - |
| EI562_RS11190 (EI562_11190) | - | 2222492..2222902 (-) | 411 | WP_006785978.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| EI562_RS11195 (EI562_11195) | - | 2222902..2223297 (-) | 396 | WP_020899223.1 | hypothetical protein | - |
| EI562_RS11200 (EI562_11200) | - | 2223281..2224780 (-) | 1500 | WP_006785974.1 | TIGR03752 family integrating conjugative element protein | - |
| EI562_RS11205 (EI562_11205) | - | 2224770..2225720 (-) | 951 | WP_006785972.1 | TIGR03749 family integrating conjugative element protein | - |
| EI562_RS11210 (EI562_11210) | - | 2225720..2226379 (-) | 660 | WP_004115533.1 | PFL_4703 family integrating conjugative element protein | - |
| EI562_RS11215 (EI562_11215) | - | 2226376..2226732 (-) | 357 | WP_004115534.1 | TIGR03750 family conjugal transfer protein | - |
| EI562_RS11220 (EI562_11220) | - | 2226745..2227131 (-) | 387 | WP_006785968.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| EI562_RS11225 (EI562_11225) | - | 2227167..2227409 (-) | 243 | WP_003029734.1 | TIGR03758 family integrating conjugative element protein | - |
| EI562_RS11230 (EI562_11230) | - | 2227409..2227756 (-) | 348 | WP_006785967.1 | RAQPRD family integrative conjugative element protein | - |
| EI562_RS11235 (EI562_11235) | - | 2227941..2228288 (+) | 348 | WP_016808262.1 | FxLYD domain-containing protein | - |
| EI562_RS11240 (EI562_11240) | - | 2228379..2229137 (-) | 759 | WP_006785966.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| EI562_RS11245 (EI562_11245) | traD | 2229130..2231229 (-) | 2100 | WP_006785965.1 | type IV conjugative transfer system coupling protein TraD | - |
| EI562_RS11250 (EI562_11250) | - | 2231222..2231710 (-) | 489 | WP_006785964.1 | hypothetical protein | - |
| EI562_RS11255 (EI562_11255) | - | 2231721..2232293 (-) | 573 | WP_006785963.1 | restriction endonuclease | - |
| EI562_RS11260 (EI562_11260) | - | 2232293..2232826 (-) | 534 | WP_006785962.1 | integrating conjugative element protein | - |
| EI562_RS11265 (EI562_11265) | - | 2232832..2233467 (-) | 636 | WP_006785961.1 | transglycosylase SLT domain-containing protein | - |
| EI562_RS11270 (EI562_11270) | - | 2233446..2234168 (-) | 723 | WP_006785960.1 | TIGR03759 family integrating conjugative element protein | - |
| EI562_RS11275 (EI562_11275) | - | 2234180..2234938 (-) | 759 | WP_020899224.1 | hypothetical protein | - |
| EI562_RS11280 (EI562_11280) | - | 2234935..2235600 (-) | 666 | WP_006785957.1 | PilL N-terminal domain-containing protein | - |
| EI562_RS11285 (EI562_11285) | - | 2235739..2236176 (-) | 438 | WP_023310103.1 | DUF29 domain-containing protein | - |
| EI562_RS11290 (EI562_11290) | ssb | 2236310..2236846 (-) | 537 | WP_006785953.1 | single-stranded DNA-binding protein | Machinery gene |
| EI562_RS11295 (EI562_11295) | - | 2236907..2237377 (-) | 471 | WP_006785950.1 | STY4534 family ICE replication protein | - |
| EI562_RS11300 (EI562_11300) | - | 2238015..2240036 (-) | 2022 | WP_006777725.1 | DNA topoisomerase III | - |
| EI562_RS11305 (EI562_11305) | - | 2240052..2240606 (-) | 555 | WP_006777724.1 | hypothetical protein | - |
| EI562_RS11310 (EI562_11310) | - | 2240608..2241321 (-) | 714 | WP_010615557.1 | PFL_4669 family integrating conjugative element protein | - |
| EI562_RS11315 (EI562_11315) | - | 2241738..2242976 (-) | 1239 | WP_006777723.1 | STY4528 family pathogenicity island replication protein | - |
| EI562_RS11320 (EI562_11320) | - | 2243076..2243324 (-) | 249 | WP_004115572.1 | hypothetical protein | - |
| EI562_RS11325 (EI562_11325) | - | 2243321..2243911 (-) | 591 | WP_006777722.1 | DUF2857 domain-containing protein | - |
| EI562_RS11330 (EI562_11330) | - | 2243918..2244628 (-) | 711 | WP_006777721.1 | DUF2786 domain-containing protein | - |
| EI562_RS11335 (EI562_11335) | - | 2244621..2246315 (-) | 1695 | WP_006777719.1 | ParB family protein | - |
| EI562_RS11340 (EI562_11340) | dnaB-PI | 2246312..2247682 (-) | 1371 | WP_006777718.1 | SPI-7-type island replicative DNA helicase | - |
| EI562_RS11345 (EI562_11345) | - | 2247675..2248550 (-) | 876 | WP_006777717.1 | ParA family protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19246.33 Da Isoelectric Point: 6.2363
>NTDB_id=330738 EI562_RS11290 WP_006785953.1 2236310..2236846(-) (ssb) [Enterobacter asburiae strain CAV1043]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQAGQEKYTTEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYDCSRVAIHAL
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQAGQEKYTTEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYDCSRVAIHAL
Nucleotide
Download Length: 537 bp
>NTDB_id=330738 EI562_RS11290 WP_006785953.1 2236310..2236846(-) (ssb) [Enterobacter asburiae strain CAV1043]
ATGTCCTCACGCGGCGTTAACAAGGTTATCCTTGTCGGAAACCTCGGCCAGGATCCTGAAGTTCGTTATATTCCCAACGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGCGATAAGCAGTCCGGCGAACAGAAAGAAGTGACCG
AATGGCACAGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGCAAAGGCTCCCAGGTTTACATC
GAGGGTCAGCTGCGCACACGCAAATGGACCGATCAGGCCGGCCAGGAGAAATACACCACAGAGGTGGTGGTCAATATTGG
TGGCACCATGCAGATGCTTGGCGGCCGCCAGTCCGGCAGCGGACAGAATACGTCTTCCCGGAATGACTGGGGGCAGCCTC
AGCAACCTTCAGGACCGACTCACAGTGGCCAGGCCTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGACTGTTCCAGAGTGGCAATTCACGCCCTCTGA
ATGTCCTCACGCGGCGTTAACAAGGTTATCCTTGTCGGAAACCTCGGCCAGGATCCTGAAGTTCGTTATATTCCCAACGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGCGATAAGCAGTCCGGCGAACAGAAAGAAGTGACCG
AATGGCACAGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGCAAAGGCTCCCAGGTTTACATC
GAGGGTCAGCTGCGCACACGCAAATGGACCGATCAGGCCGGCCAGGAGAAATACACCACAGAGGTGGTGGTCAATATTGG
TGGCACCATGCAGATGCTTGGCGGCCGCCAGTCCGGCAGCGGACAGAATACGTCTTCCCGGAATGACTGGGGGCAGCCTC
AGCAACCTTCAGGACCGACTCACAGTGGCCAGGCCTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGACTGTTCCAGAGTGGCAATTCACGCCCTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
63.842 |
99.438 |
0.635 |
| ssb | Glaesserella parasuis strain SC1401 |
49.724 |
100 |
0.506 |
| ssb | Neisseria meningitidis MC58 |
44.633 |
99.438 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
44.318 |
98.876 |
0.438 |