Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | EHC69_RS15465 | Genome accession | NZ_CP034298 |
| Coordinates | 3106671..3107264 (-) | Length | 197 a.a. |
| NCBI ID | WP_114867891.1 | Uniprot ID | A0A7Z2MU40 |
| Organism | Vibrio parahaemolyticus strain 20160303005-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3101671..3112264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC69_RS15445 (EHC69_15625) | aroB | 3102547..3103647 (-) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
| EHC69_RS15450 (EHC69_15630) | aroK | 3103679..3104197 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| EHC69_RS15455 (EHC69_15635) | pilQ | 3104386..3106134 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| EHC69_RS15460 (EHC69_15640) | pilP | 3106166..3106681 (-) | 516 | WP_069538154.1 | pilus assembly protein PilP | Machinery gene |
| EHC69_RS15465 (EHC69_15645) | pilO | 3106671..3107264 (-) | 594 | WP_114867891.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| EHC69_RS15470 (EHC69_15650) | pilN | 3107257..3107835 (-) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| EHC69_RS15475 (EHC69_15655) | pilM | 3107819..3108835 (-) | 1017 | WP_005480475.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| EHC69_RS15480 (EHC69_15660) | - | 3108978..3111548 (+) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23155.72 Da Isoelectric Point: 4.9485
>NTDB_id=330552 EHC69_RS15465 WP_114867891.1 3106671..3107264(-) (pilO) [Vibrio parahaemolyticus strain 20160303005-1]
MVNWQYLEMDEISEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQYLEMDEISEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=330552 EHC69_RS15465 WP_114867891.1 3106671..3107264(-) (pilO) [Vibrio parahaemolyticus strain 20160303005-1]
ATGGTTAATTGGCAATATCTAGAAATGGATGAGATTTCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAATATCTAGAAATGGATGAGATTTCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
93.158 |
96.447 |
0.898 |
| pilO | Vibrio cholerae strain A1552 |
73.096 |
100 |
0.731 |