Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | EHC69_RS15470 | Genome accession | NZ_CP034298 |
| Coordinates | 3107257..3107835 (-) | Length | 192 a.a. |
| NCBI ID | WP_015297396.1 | Uniprot ID | A0A243VIJ8 |
| Organism | Vibrio parahaemolyticus strain 20160303005-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3102257..3112835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC69_RS15445 (EHC69_15625) | aroB | 3102547..3103647 (-) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
| EHC69_RS15450 (EHC69_15630) | aroK | 3103679..3104197 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| EHC69_RS15455 (EHC69_15635) | pilQ | 3104386..3106134 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| EHC69_RS15460 (EHC69_15640) | pilP | 3106166..3106681 (-) | 516 | WP_069538154.1 | pilus assembly protein PilP | Machinery gene |
| EHC69_RS15465 (EHC69_15645) | pilO | 3106671..3107264 (-) | 594 | WP_114867891.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| EHC69_RS15470 (EHC69_15650) | pilN | 3107257..3107835 (-) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| EHC69_RS15475 (EHC69_15655) | pilM | 3107819..3108835 (-) | 1017 | WP_005480475.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| EHC69_RS15480 (EHC69_15660) | - | 3108978..3111548 (+) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| EHC69_RS15485 (EHC69_15665) | oxyR | 3111604..3112512 (-) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22438.95 Da Isoelectric Point: 6.9944
>NTDB_id=330553 EHC69_RS15470 WP_015297396.1 3107257..3107835(-) (pilN) [Vibrio parahaemolyticus strain 20160303005-1]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=330553 EHC69_RS15470 WP_015297396.1 3107257..3107835(-) (pilN) [Vibrio parahaemolyticus strain 20160303005-1]
GTGCTTTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAATATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTTTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAATATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |