Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EHC69_RS15215 | Genome accession | NZ_CP034298 |
| Coordinates | 3053727..3054257 (-) | Length | 176 a.a. |
| NCBI ID | WP_005466625.1 | Uniprot ID | Q87LA3 |
| Organism | Vibrio parahaemolyticus strain 20160303005-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3048727..3059257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC69_RS15195 (EHC69_15365) | - | 3049051..3049380 (-) | 330 | WP_005481006.1 | MSHA biogenesis protein MshK | - |
| EHC69_RS15200 (EHC69_15370) | gspM | 3049373..3050023 (-) | 651 | WP_005497276.1 | type II secretion system protein GspM | - |
| EHC69_RS15205 (EHC69_15375) | - | 3050020..3051465 (-) | 1446 | WP_114867885.1 | MSHA biogenesis protein MshI | - |
| EHC69_RS15210 (EHC69_15380) | csrD | 3051477..3053486 (-) | 2010 | WP_114867886.1 | RNase E specificity factor CsrD | - |
| EHC69_RS15215 (EHC69_15385) | ssb | 3053727..3054257 (-) | 531 | WP_005466625.1 | single-stranded DNA-binding protein | Machinery gene |
| EHC69_RS15220 (EHC69_15390) | qstR | 3054536..3055180 (+) | 645 | WP_005480993.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| EHC69_RS15225 (EHC69_15395) | galU | 3055438..3056310 (+) | 873 | WP_005466627.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19563.62 Da Isoelectric Point: 4.9269
>NTDB_id=330548 EHC69_RS15215 WP_005466625.1 3053727..3054257(-) (ssb) [Vibrio parahaemolyticus strain 20160303005-1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=330548 EHC69_RS15215 WP_005466625.1 3053727..3054257(-) (ssb) [Vibrio parahaemolyticus strain 20160303005-1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.006 |
100 |
0.824 |
| ssb | Glaesserella parasuis strain SC1401 |
57.143 |
100 |
0.614 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.483 |