Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EHC69_RS14065 | Genome accession | NZ_CP034298 |
| Coordinates | 2843365..2843829 (+) | Length | 154 a.a. |
| NCBI ID | WP_025524817.1 | Uniprot ID | A0A7Z2MTQ1 |
| Organism | Vibrio parahaemolyticus strain 20160303005-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2838365..2848829
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC69_RS14050 (EHC69_14210) | pdhR | 2840398..2841165 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| EHC69_RS14055 (EHC69_14215) | ampD | 2841571..2842122 (-) | 552 | WP_005484832.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EHC69_RS14060 (EHC69_14220) | nadC | 2842215..2843102 (+) | 888 | WP_114867833.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| EHC69_RS14065 (EHC69_14225) | pilA | 2843365..2843829 (+) | 465 | WP_025524817.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| EHC69_RS14070 (EHC69_14230) | pilB | 2843836..2845521 (+) | 1686 | WP_025789071.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EHC69_RS14075 (EHC69_14235) | pilC | 2845546..2846769 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| EHC69_RS14080 (EHC69_14240) | pilD | 2846834..2847703 (+) | 870 | WP_025622886.1 | A24 family peptidase | Machinery gene |
| EHC69_RS14085 (EHC69_14245) | coaE | 2847704..2848318 (+) | 615 | WP_025789072.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16144.59 Da Isoelectric Point: 8.1135
>NTDB_id=330537 EHC69_RS14065 WP_025524817.1 2843365..2843829(+) (pilA) [Vibrio parahaemolyticus strain 20160303005-1]
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKVAAAMKLAVELCAHENASDATTFKSNCLSGS
NGVPAKITNLNDISIEAVAGSSGVNVIAQAVVVKGPIAAKEQYIMASNYTGSGIEWTSSCKDAGGKAQTDYCPE
MKHSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKVAAAMKLAVELCAHENASDATTFKSNCLSGS
NGVPAKITNLNDISIEAVAGSSGVNVIAQAVVVKGPIAAKEQYIMASNYTGSGIEWTSSCKDAGGKAQTDYCPE
Nucleotide
Download Length: 465 bp
>NTDB_id=330537 EHC69_RS14065 WP_025524817.1 2843365..2843829(+) (pilA) [Vibrio parahaemolyticus strain 20160303005-1]
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCTATTATCGGTATTTT
GGCTGCATTTGCCGTACCGGCATATCAAAACTATACAAAAAAAGCGACATTAGCGGAATTCCCCAAAGTAGCAGCAGCTA
TGAAATTAGCAGTTGAGTTGTGCGCACACGAAAATGCTTCGGATGCAACGACTTTTAAATCAAACTGTCTTTCCGGTAGT
AATGGGGTGCCTGCAAAGATTACTAACCTAAATGATATATCAATTGAAGCTGTCGCAGGGTCATCAGGTGTAAATGTTAT
TGCACAAGCAGTTGTAGTAAAAGGACCTATCGCAGCTAAAGAACAATACATAATGGCATCAAACTACACAGGAAGTGGCA
TTGAATGGACTAGCTCTTGTAAAGATGCAGGGGGTAAGGCTCAAACTGATTACTGCCCTGAATAA
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCTATTATCGGTATTTT
GGCTGCATTTGCCGTACCGGCATATCAAAACTATACAAAAAAAGCGACATTAGCGGAATTCCCCAAAGTAGCAGCAGCTA
TGAAATTAGCAGTTGAGTTGTGCGCACACGAAAATGCTTCGGATGCAACGACTTTTAAATCAAACTGTCTTTCCGGTAGT
AATGGGGTGCCTGCAAAGATTACTAACCTAAATGATATATCAATTGAAGCTGTCGCAGGGTCATCAGGTGTAAATGTTAT
TGCACAAGCAGTTGTAGTAAAAGGACCTATCGCAGCTAAAGAACAATACATAATGGCATCAAACTACACAGGAAGTGGCA
TTGAATGGACTAGCTCTTGTAAAGATGCAGGGGGTAAGGCTCAAACTGATTACTGCCCTGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
58.71 |
100 |
0.591 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.865 |
96.104 |
0.383 |
| pilA | Haemophilus influenzae 86-028NP |
41.429 |
90.909 |
0.377 |